Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq18 167 6e-36 seq1943 100 7e-16 >seq18 Length=557087 Score = 167 bits (184), Expect = 6e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| || || ||||| || || | |||||| |||| || ||||||||||| Sbjct 280005 CAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATC 280064 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| ||||||||||| ||||||||||| || ||| ||| || || || Sbjct 280065 CTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 280124 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 |||||||||| |||||| || | |||||||| || || ||||| | ||||| || Sbjct 280125 CTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGT 280184 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| |||||||| ||||||||||| || || Sbjct 280185 CTTCCCCGTGAGGGTTTTCACAAAGATCTG 280214 Score = 167 bits (184), Expect = 6e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| || || ||||| || || | |||||| |||| || ||||||||||| Sbjct 280233 CAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATC 280292 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| ||||||||||| ||||||||||| || ||| ||| || || || Sbjct 280293 CTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 280352 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 |||||||||| |||||| || | |||||||| || || ||||| | ||||| || Sbjct 280353 CTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGT 280412 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| |||||||| ||||||||||| || || Sbjct 280413 CTTCCCCGTGAGGGTTTTCACAAAGATCTG 280442 Score = 165 bits (182), Expect = 2e-35 Identities = 170/222 (77%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| || || ||||| || || | |||||| |||| || ||||||||||| Sbjct 280461 CAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATC 280520 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| ||||||||||| ||||||||||| || ||| ||| || || || Sbjct 280521 CTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 280580 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 |||||||||| |||||| ||||| ||| |||| || || ||||| | ||||| || Sbjct 280581 CTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCACATCGAGAGTGATGGT 280640 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638 ||| || || ||||| |||||||| || || |||| |||| Sbjct 280641 CTTCCCTGTAAGAGTCTTCACAAAGATCTG---CATTGTAGC 280679 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||||||||| |||||| |||| ||||||||||| || | ||||||||| | ||| Sbjct 280091 CTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATTCAG 280032 Query 200995 AAAGAGTCTACTCTTCAC 201012 |||||||| || |||||| Sbjct 280031 AAAGAGTCCACCCTTCAC 280014 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||||||||| |||||| |||| ||||||||||| || | ||||||||| | ||| Sbjct 280319 CTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATTCAG 280260 Query 200995 AAAGAGTCTACTCTTCAC 201012 |||||||| || |||||| Sbjct 280259 AAAGAGTCCACCCTTCAC 280242 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||||||||| |||||| |||| ||||||||||| || | ||||||||| | ||| Sbjct 280547 CTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATTCAG 280488 Query 200995 AAAGAGTCTACTCTTCAC 201012 |||||||| || |||||| Sbjct 280487 AAAGAGTCCACCCTTCAC 280470 >seq1943 Length=707543 Score = 100 bits (110), Expect = 7e-16 Identities = 142/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| || | |||||| || | | |||||| || || || || |||||||| |||||| Sbjct 224045 TCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGCTTTCCTGCGAAG 224104 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || ||||||||||| || || || || || || || || || |||||| | Sbjct 224105 ATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTCACATTT 224164 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| |||||| | | ||| || || | ||||| || || ||||| || || ||||| Sbjct 224165 TCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCCGTAAGGGTCTTCACG 224224 Query 199619 AAAATTTGGTACATTTTAG 199637 || ||||| |||||||| Sbjct 224225 AAGATTTG---CATTTTAG 224240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178851135487555