Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1943 109 6e-19 seq18 107 2e-18 >seq1943 Length=707543 Score = 109 bits (120), Expect = 6e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || || ||||| || || ||||| || || ||||| | |||| || || ||||| || Sbjct 224039 GTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGCTTTCCT 224098 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | |||||||| || | ||| | || ||||||||| ||| ||| ||| Sbjct 224099 GCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTC 224158 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| | |||||| || | ||||||||||| ||||| || || Sbjct 224159 ACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCCGTAAGGGTC 224218 Query 46577 TTAACAAAGATTTGCATTTT 46596 || || |||||||||||||| Sbjct 224219 TTCACGAAGATTTGCATTTT 224238 >seq18 Length=557087 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||||| || | || ||| || || || ||||| || | Sbjct 279989 TGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAG 280048 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | | || || ||||||||||||||||| || | |||||||| || | | Sbjct 280049 ACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAG 280108 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||| ||| | || | | ||||| | |||| Sbjct 280109 GAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCA 280168 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| | |||||||| || ||||| || ||||| |||||||| ||||| Sbjct 280169 CATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||||| || | || ||| || || || ||||| || | Sbjct 280217 TGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAG 280276 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | | || || ||||||||||||||||| || | |||||||| || | | Sbjct 280277 ACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAG 280336 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||| ||| | || | | ||||| | |||| Sbjct 280337 GAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCA 280396 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| | |||||||| || ||||| || ||||| |||||||| ||||| Sbjct 280397 CATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280445 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| ||||| || | || ||| || || || ||||| || | Sbjct 280445 TGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAG 280504 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | | || || ||||||||||||||||| || | |||||||| || | | Sbjct 280505 ACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAG 280564 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||| ||| | | | | || || | |||| Sbjct 280565 GAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCA 280624 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| | |||||||| || || || || || || |||||||| |||||| Sbjct 280625 CATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 280674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565205439535800