Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18 109 5e-19 seq1943 107 2e-18 seq2540 91.5 1e-13 >seq18 Length=557087 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| |||||||| || |||||||| |||| || ||| | | Sbjct 280217 ATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280158 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| || | ||||| ||||| ||||| | || || Sbjct 280157 GACACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 280098 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | | || || || |||||| Sbjct 280097 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAAC 280038 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || || || | || || || ||||||||||| ||||||| ||| Sbjct 280037 ATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCCTGAGAGGTGGC 279990 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| |||||||| || |||||||| |||| || ||| | | Sbjct 280445 ATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280386 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| || | ||||| ||||| ||||| | || || Sbjct 280385 GACACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 280326 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | | || || || |||||| Sbjct 280325 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAAC 280266 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || || || | || || || ||||||||||| ||||||| ||| Sbjct 280265 ATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCCTGAGAGGTGGC 280218 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || || || |||||||| |||| || ||| | | Sbjct 280674 AATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCATC 280615 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||| | || | ||| || | ||||| ||||| ||||| | || || Sbjct 280614 AGATACCATCGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCA 280555 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | | || || || ||||| Sbjct 280554 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAA 280495 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || || | || || || ||||||||||| ||||||| ||| Sbjct 280494 CATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCCTGAGAGGTGGC 280446 >seq1943 Length=707543 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || ||||| ||||||||||| ||||||| || | Sbjct 224238 AAAATGCAAATCTTCGTGAAGACCCTTACGGGAAAAACCATCACTCTCGACGTGGAACCT 224179 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 |||||| | | ||| | || | ||||||| ||||| ||||| | ||||||| || Sbjct 224178 TCCGACACCATCGAAAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCA-TCCCGCCTGA 224120 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| || || || || || |||| | || || || || Sbjct 224119 TCAGCAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGATTA 224060 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||| || |||||| || || || ||||| Sbjct 224059 CAACATTCAGAAGGAAAGCACCCTTCACTTGGT 224027 >seq2540 Length=2452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/146 (77%), Gaps = 8/146 (5%) Strand=Plus/Minus Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA-AGCG 133364 ||||||||||| |||||||| ||||| |||||||| || |||||||| ||| || || | Sbjct 1469 CTGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGCTGCTCGTTGGCGTCCAGAGTG 1410 Query 133365 CTCCCAGTCG-CGCGTGTCCTTGGA--CAGGTCCACCTCCTCGACGGTCCAAAACGACGC 133421 |||||||| || | ||| || | || ||| | || || ||||||||||| || Sbjct 1409 -GCCCAGTCGACGAG-GTC--TGCACTCATGTCGATTTCTTCTGTTGTCCAAAACGAAGC 1354 Query 133422 CTCGGCTTTTTTGTACATACTCCACA 133447 || |||||||||||||| |||||| Sbjct 1353 TTCTGCTTTTTTGTACATGTTCCACA 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500143633673600