Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2961 320 2e-82 seq45 109 7e-19 >seq2961 Length=11046 Score = 320 bits (354), Expect = 2e-82 Identities = 480/676 (71%), Gaps = 7/676 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||| ||| || |||||||| ||||| || ||||| ||||| || Sbjct 6125 TCGAAGTCCTCGCCCCCCAGGTGCGTGTCCCCCGCCGTCGCCTTCACTTCGAAGATCCCG 6184 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| || | | || ||| || || ||||| || || |||| ||| || || || ||| Sbjct 6185 TCTTCGATCGTCAGCAGCGACACGTCGAACGTCCCGCCCCCCATGTCGAATATCAGCACG 6244 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || ||| ||||| || || ||||||||||| ||||| || |||||||| Sbjct 6245 TTCATCTCCCCGTGGCCCTTCTTGTCCAGCCCGTACGCGATCGCCGCTGCGGTTGGTTCG 6304 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 ||||| || || || |||||| || || || ||| |||| || |||||||| ||||| Sbjct 6305 TTAATGATGCGCAGCACGTTCAGCCCTGCGATCGTTCCCGCGTCCTTCGTCGCCTGTCGC 6364 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| ||||| ||||| ||||| | ||||| ||| | || | ||| |||| Sbjct 6365 TGGCTGTCGTTGAAGTACGCCGGCACCGTGATCACCGCCTCCTTCACCTCCTTTCCGATG 6424 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCT-CTTCAGCCGC 7815 ||| |||||||| || ||||| || | || ||||||| || |||| || | | | Sbjct 6425 AACGCCTCCGCGATTTCCTTCATCTTCATCAGCACCATCGCCGATATCTCCTCCGGGTGG 6484 Query 7816 AAACTGTT-TCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 || | || | | | | | | | || || ||||| |||| || || |||||| || | Sbjct 6485 AACGTCTTCTTGCTGCCCTGGT-AACTC-ACTTCGATCAGCGGCTTCCCCGCAGGCCCCG 6542 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 | ||| | ||| ||| | ||||| || | || ||| |||| ||||| | Sbjct 6543 CCTTCACCGTGAACGGCCAGTGCTTCATGTCCGCCTGCACCGCGGGGTCGTCGAACTTCC 6602 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| || ||||| || || || || ||||| | |||||| || ||||||| Sbjct 6603 GCCCGATCAGCCGCTTCGCGTCGAAGACCGTGTTCTCCGGGTTCCGCGCCACCTGGTTCT 6662 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 |||||||||| || | || || || | ||||||||||| ||||| || || |||| Sbjct 6663 TCGCCGCGTCTCCCACCAGCCGCTC---CGTGTCCGTAAACGCCACGTAAGACGGCGTCG 6719 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 | || || || ||||||||||| || ||||| |||| |||||| | ||| ||||| |||| Sbjct 6720 TCCGGTTTCCCTGGTCGTTCGCGATGATTTCCACGCCGTCGTTCTTCCACACGCCCACGC 6779 Query 8115 ACGAATACGTTGTTCC 8130 |||| ||||| || || Sbjct 6780 ACGAGTACGTGGTGCC 6795 >seq45 Length=81829 Score = 109 bits (120), Expect = 7e-19 Identities = 191/276 (69%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || ||||| || ||||||||||| || || | | || | | || | ||||| | Sbjct 33381 GAGACATCGAAGGTACCACCACCAAGATCGTACACAAGAATGGTCTTTTCGTCCT----- 33327 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 |||| || |||||||| || || || || || || || || || || ||||| | ||| Sbjct 33326 -TCTTGTCCAGACCGTAGGCAATGGCTGCGGCGGTGGGCTCGTTGATGATACGGATGAC- 33269 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||| |||||||| || | | || || || || || || || || | |||||| ||||| Sbjct 33268 GTTGAGGCCAGCGATGGCACCAGCGTCCTTAGTGGCCTGGCGCTGAGCATCGTTGAAGTA 33209 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||||||||| || || || |||| | |||||| || || | || ||||| | || Sbjct 33208 GGCCGGGACAGTGACCACGGCGTTCTTGACTTCTTTGCCCAAGTAGCTCTCCGCAACTTC 33149 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| || |||||||| | ||| | ||||| Sbjct 33148 CTTCATCTTTCCCAGAACCATAGCTGAGACTTCTTC 33113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635095763818600