Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1943 96.9 3e-14 seq18 96.9 3e-14 >seq1943 Length=707543 Score = 96.9 bits (106), Expect = 3e-14 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| ||||| || ||| |||||||| | ||||| || || |||| Sbjct 224029 CAAG-TGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAA 224087 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 |||| ||||| || || ||||| | ||||||||||| || || || || || ||||| | Sbjct 224088 GTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGA 224147 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 |||| || || || || || || | | | || |||||||| | ||||| Sbjct 224148 TTTTCGCCTTCACATTTTCGATGGTGTC-GGAAGGTTCCACGTCGAGAGTGATGGTTTTT 224206 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| || || ||||| |||||||| Sbjct 224207 CCCGTAAGGGTCTTCACGAAGATTTGCAT 224235 >seq18 Length=557087 Score = 96.9 bits (106), Expect = 3e-14 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| ||||| ||| |||||||||| || || ||| ||| || | Sbjct 280011 CAAG-TGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCA 280069 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | || || ||||| || ||||| | ||||||||||||||||| || || || || |||| Sbjct 280070 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 280129 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 | ||| || || |||||| || || | || | || |||||||| | || || Sbjct 280130 TCTTTGCCTTCACATTCTCAATGGTGTCTG-ATGGCTCCACATCGAGAGTGATGGTCTTC 280188 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || ||||| || || || ||||| Sbjct 280189 CCCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 96.9 bits (106), Expect = 3e-14 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| ||||| ||| |||||||||| || || ||| ||| || | Sbjct 280239 CAAG-TGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCA 280297 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | || || ||||| || ||||| | ||||||||||||||||| || || || || |||| Sbjct 280298 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 280357 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 | ||| || || |||||| || || | || | || |||||||| | || || Sbjct 280358 TCTTTGCCTTCACATTCTCAATGGTGTCTG-ATGGCTCCACATCGAGAGTGATGGTCTTC 280416 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || ||||| || || || ||||| Sbjct 280417 CCCGTGAGGGTTTTCACAAAGATCTGCAT 280445 Score = 96.9 bits (106), Expect = 3e-14 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| ||||| ||| |||||||||| || || ||| ||| || | Sbjct 280467 CAAG-TGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCA 280525 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | || || ||||| || ||||| | ||||||||||||||||| || || || || |||| Sbjct 280526 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 280585 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 | ||| || || || || ||||| | || | || |||||||| | || || Sbjct 280586 TCTTTGCCTTCACATTTTCGATGGTATCTG-ATGGCTCCACATCGAGAGTGATGGTCTTC 280644 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||||||| || || || || ||||| Sbjct 280645 CCTGTAAGAGTCTTCACAAAGATCTGCAT 280673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029049293760850