Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2794 102 2e-16 >seq2794 Length=11877 Score = 102 bits (112), Expect = 2e-16 Identities = 238/355 (67%), Gaps = 22/355 (6%) Strand=Plus/Plus Query 213303 TCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCAC 213362 || || || |||||||| |||| ||||||||| ||||| | | ||| || || | Sbjct 2588 TCGGCGAGGCCCTGGACGCCGAGGCCGATGGGCCTGTGGCGGAAGTTGC---TGCTGCGC 2644 Query 213363 TCCTCC---AAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGT------G 213413 |||| | |||||| ||||||| ||||||||| ||||| | |||||| || | Sbjct 2645 GCCTCGGGGACGGGGTAGAAGTTGCGGTCGATGATGTTGTTCAAGTTGCGCGTCATGACG 2704 Query 213414 GCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGC--CCCCGTCCTGCA 213471 ||||| ||| | ||| |||| | ||| || || | ||| | | || Sbjct 2705 GCCAC------GACGCGCTTGAGGCCCTCGAAGTCGAAGGCGC-GCTTCGCCG-CGTCCA 2756 Query 213472 CAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGT 213531 | || ||||| | | | ||||| |||||| ||||||||||||| | | ||| Sbjct 2757 CGAAGCGCGGCAGCGACACGGAGGCCAAGTTGCAGACGGCCACCTCCTCGGGGCTGGTGA 2816 Query 213532 ACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTG 213591 ||| || || ||| ||||| |||||||| || | |||||||||| ||| ||||| Sbjct 2817 ACTGCACGACTTCGCAGCACAAGTTGCTGCTGCGCAGCGTGCCCAGGTGCTGCTGGTTGC 2876 Query 213592 ACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| |||| | || ||||| |||||||| |||| ||| || || | ||| Sbjct 2877 TCTTCCGGTTGCACGCGTCTTTGTACAGCATGTACGGGGTCCCCGTTTCGATCTG 2931 Score = 84.2 bits (92), Expect = 4e-11 Identities = 116/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| ||||| |||| ||||||||| | ||| ||||| || | | | | || || Sbjct 3372 CATGAAGAGGTCTGGGATCCACAGCGCCGGGAAAAGGTCTCTCGCGCGCATTTCCTCTTT 3431 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || ||| || || | || ||||| ||||| ||||| || ||||||||||||| ||| Sbjct 3432 GCCGTGGTTCTTCCGAATGTCCAGAAACTCAAAAATGTCTGCATGCCACGGCTCCACGTA 3491 Query 213941 GATGGCAAAGGCGCCCGGCCTCTTGCCG---CCCTGGTCCAC 213979 | || | | ||| || ||||||| ||||||||||| Sbjct 3492 CACCGCGAGGCTCCCCTTCCGCTTGCCGCCCCCCTGGTCCAC 3533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931478479993600