Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1943 100 2e-15 seq18 91.5 1e-12 >seq1943 Length=707543 Score = 100 bits (110), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| || ||||| || || || ||||| | ||||| ||| || |||| Sbjct 224029 CAAG-TGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAA 224087 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 |||||||||| || || |||||||| || |||||||| || || || ||||||||||| | Sbjct 224088 GTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGA 224147 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 | || || ||| ||| || || || | || || || || || ||||| | Sbjct 224148 TTTTCGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTC 224207 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| ||||| ||||| Sbjct 224208 CCGTAAGGGTCTTCACGAAGATTTG 224232 >seq18 Length=557087 Score = 91.5 bits (100), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| || || || ||| || || ||||| || || || |||||||| || Sbjct 280495 TTGTAATCAGACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGC 280554 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||||||||| || |||||||| ||||||||| || ||| ||| || ||||| Sbjct 280555 TGATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTTTCGATGGTATCT 280614 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | | || || || || || || || || |||||||| || || || || Sbjct 280615 GATGGCTCCA-CATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTG 280670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267979095515420