Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2961 194 2e-44 seq18 170 3e-37 seq1943 147 3e-30 seq45 138 1e-27 >seq2961 Length=11046 Score = 194 bits (214), Expect = 2e-44 Identities = 457/685 (67%), Gaps = 4/685 (1%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || ||||| | || || || ||||| || || || || ||| | || || | || || Sbjct 6807 GGCATCGACCTGGGCACCACGTACTCGTGCGTGGGCGTGTGGAAGAACGACGGCGTGGAA 6748 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| |||| ||||| |||||||| || || || || ||||| || ||||| || | Sbjct 6747 ATCATCGCGAACGACCAGGGAAACCGGACGACGCCGTCTTACGTGGCGTTTACGGACACG 6688 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || || || || ||||| || || || || ||| || |||||| || || ||| Sbjct 6687 GAGCGGCTGGTGGGAGACGCGGCGAAGAACCAGGTGGCGCGGAACCCGGAGAACACGGTC 6628 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 || ||||||||||| || || || || ||||| || || || | || || Sbjct 6627 TTCGACGCGAAGCGGCTGATCGGGCGGAAGTTCGACGACCCCGCGGTGCAGGCGGACATG 6568 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCGGTGTG-GCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||||| | | | | | || ||| | || | ||||| |||| | || || Sbjct 6567 AAGCACTGGCCGT-TCACGGTGAAGGCGGGGCCTGCGGGGAAGCCGCTGATCGAAGT-GA 6510 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAA-ATTTCGTCTATGGTGTTGATTA 195662 || | || || | || | || | |||| || | || ||| | |||||| |||| | Sbjct 6509 GTTACCAGGGCAGCAAGAAGACGTTCCACCCGGAGGAGATATCGGCGATGGTGCTGATGA 6450 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||| | ||||| | ||||| || || ||||| || || || | || | Sbjct 6449 AGATGAAGGAAATCGCGGAGGCGTTCATCGGAAAGGAGGTGAAGGAGGCGGTGATCACGG 6390 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || || ||||||| || || ||||||||||| |||||||| | | || || | Sbjct 6389 TGCCGGCGTACTTCAACGACAGCCAGCGACAGGCGACGAAGGACGCGGGAACGATCGCAG 6330 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 | || ||| || | || || || |||||||| || || || || || || || |||| Sbjct 6329 GGCTGAACGTGCTGCGCATCATTAACGAACCAACCGCAGCGGCGATCGCGTACGGGCTGG 6270 Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902 ||||||| ||| || | || || |||| || || | || || || ||||| | Sbjct 6269 ACAAGAAGGGCCACGGGGAGATGAACGTGCTGATATTCGACATGGGGGGCGGGACGTTCG 6210 Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962 | || || || || | || |||| || || |||||||| ||||| || || || || | Sbjct 6209 ACGTGTCGCTGCTGACGATCGAAGACGGGATCTTCGAAGTGAAGGCGACGGCGGGGGACA 6150 Query 195963 CTCATCTAGGTGGTGAAGATTTCGA 195987 | || || || || || || ||||| Sbjct 6149 CGCACCTGGGGGGCGAGGACTTCGA 6125 >seq18 Length=557087 Score = 170 bits (188), Expect = 3e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||||||||| || || || || ||||| ||||| || ||| | ||| Sbjct 280217 ATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280158 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || || |||||||| || ||||| |||||||| || |||||| Sbjct 280157 GACACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 280098 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||| || || || || ||||| || |||||| | || || ||||||||||| Sbjct 280097 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAAC 280038 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| || ||||| || || ||| | || || Sbjct 280037 ATTCAGAAAGAGTCCACCCTTCACTTGGTGCT 280006 Score = 170 bits (188), Expect = 3e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||||||||| || || || || ||||| ||||| || ||| | ||| Sbjct 280445 ATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280386 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || || |||||||| || ||||| |||||||| || |||||| Sbjct 280385 GACACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 280326 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||| || || || || ||||| || |||||| | || || ||||||||||| Sbjct 280325 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAAC 280266 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| || ||||| || || ||| | || || Sbjct 280265 ATTCAGAAAGAGTCCACCCTTCACTTGGTGCT 280234 Score = 167 bits (184), Expect = 3e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || ||||| || || || ||||| ||||| || ||| | ||| Sbjct 280673 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280614 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || |||||||| || ||||| |||||||| || |||||| Sbjct 280613 GATACCATCGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 280554 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||| || || || || ||||| || |||||| | || || ||||||||||| Sbjct 280553 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAAC 280494 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| || ||||| || || ||| | || || Sbjct 280493 ATTCAGAAAGAGTCCACCCTTCACTTGGTGCT 280462 >seq1943 Length=707543 Score = 147 bits (162), Expect = 3e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||| |||||||| |||||||| ||||| ||||| || || | || Sbjct 224235 ATGCAAATCTTCGTGAAGACCCTTACGGGAAAAACCATCACTCTCGACGTGGAACCTTCC 224176 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || || || ||||| ||||| ||||| || || |||||| Sbjct 224175 GACACCATCGAAAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCTGATCAG 224116 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||| || || || || || ||||| || || | || || | ||||||||| Sbjct 224115 CAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGATTACAAC 224056 Query 172042 GTTCAAAAGGA 172052 |||| ||||| Sbjct 224055 ATTCAGAAGGA 224045 >seq45 Length=81829 Score = 138 bits (152), Expect = 1e-27 Identities = 404/613 (66%), Gaps = 17/613 (3%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 || ||||| || | || ||||| ||||| || || || || | | | | | || || Sbjct 32783 ATCGGTATTGACCTGGGTACTACGTACTCTTGCGTCGGAGTGTACCGACAGGGCCGCGTG 32842 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || || || || |||||||| || ||||||| ||||| |||||| | ||| | || Sbjct 32843 GACATCATTCCCAATGACCAGGGCAACCGTATTACTCCCAGCTACGTTTCTTTTGCTGAA 32902 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 ||||||| |||| || || || || ||| || | || || ||||| | ||| || Sbjct 32903 GATGAACGCAAGATTGGCGAGGCTGCCAAGAATGAGGCTGCCATCAACCCAACCAACACC 32962 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541 |||| |||| ||| | || ||||| ||| || || ||| |||| || ||| Sbjct 32963 ATCTTCGACGTCAAGAGGCTCATTGGGCGCCGCTTCAACGAGAAGGAAGTGCAGCGCGAC 33022 Query 195542 ATAAAGGA-CTGGT--CTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 | |||| ||| | | || ||| | | | || || ||||| || Sbjct 33023 A---AGGAGCTGCTGCCGTACGAAATCATCAACAA---GGATGGAAAGCCATACATCCGC 33076 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || | | || || || | | || ||||||||| | || ||||||| || Sbjct 33077 GTCATGGTCAAGGGCCAGCCCAAGGAGCTCGCACCCGAAGAAGTCTCAGCTATGGTTCTG 33136 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 ||||||||||| |||||| | | |||| ||| || || | || || || Sbjct 33137 GGAAAGATGAAGGAAGTTGCGGAGAGCTACTTGGGCAAAGAAGTCAAGAACGCCGTGGTC 33196 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || ||||||| ||| | || || ||||| || |||||||||| ||| || Sbjct 33197 ACTGTCCCGGCCTACTTCAACGATGCTCAGCGCCAGGCCACTAAGGACGCTGGTGCCATC 33256 Query 195779 GCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 || || || ||| ||| | | || ||||| || || || || || || ||||| || || Sbjct 33257 GCTGGCCTCAAC-GTCATCCGTATCATCAACGAGCCCACCGCCGCAGCCATTGCCTACGG 33315 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 |||||||||| ||||||||| | | | | ||| | | ||||| ||||||||||| Sbjct 33316 TCTGGACAAG---AAGGACGAAAAGACCA--TTCTTG-TGTACGATCTTGGTGGTGGTAC 33369 Query 195898 GTTTGATGTCTCA 195910 || ||||||||| Sbjct 33370 CTTCGATGTCTCA 33382 Score = 105 bits (116), Expect = 9e-18 Identities = 241/362 (67%), Gaps = 13/362 (4%) Strand=Plus/Plus Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 |||||| | || | ||||| || | || || ||||| || || || || || || ||| Sbjct 34051 GACGCAGACTTGAAGAAGTCACAGATCGACGAGATTGTGCTGGTCGGTGGTTCTACTCGT 34110 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGC--TTCTTCAATAATAAAGATTTAAACAAAA 196370 || ||||||||||| ||| | | || || |||||||| || || |||| | Sbjct 34111 ATCCCGAAGATTCAGCAGCT--TATCAAGGAGTTCTTCAACGGCAAGGAGCCGAACAGAG 34168 Query 196371 CGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAG 196430 |||||||| || || || || ||||| ||||| || || ||||||| ||||||||||| Sbjct 34169 GCATCAACCCCGACGAGGCCGTCGCTTACGGTGCAGCTGTCCAGGCTGGTATTCTCTCAG 34228 Query 196431 GTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGG 196490 | | | || ||| || | |||| || ||||| | ||| | | || | Sbjct 34229 GGGAGGGCA---------CCCAGGACATGGTGCTGCTCGATGTCACCCCCCTGACTCTCG 34279 Query 196491 GTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGA 196550 || ||||||| ||||| ||||| ||| |||| | || | | ||| || || || | Sbjct 34280 GTATTGAAACCGCGGGAGGTGTCATGGCTAAGGTCATCAACAAGAATACCGTCATCCCCA 34339 Query 196551 CTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAG 196610 | |||||| || ||| || || || || || || || | | ||| | ||||| | Sbjct 34340 CGAAGAAGACTCAGACCTTCTCGACCTACTCTGACAACCAGTCCGCTGTGCTCATTCAGG 34399 Query 196611 TA 196612 || Sbjct 34400 TA 34401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657824038398800