Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 2e-15 seq1943 89.7 9e-13 >seq18 Length=557087 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||| || || |||| || | || | |||||| ||| || || || Sbjct 280444 ATGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCA 280503 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||| || ||| || | || || ||||| || || | | ||| ||||||||| Sbjct 280504 GACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGA 280563 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || || | || | |||| || ||||| || | ||| Sbjct 280564 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCC 280623 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 || || ||||| || || || ||||| || || || ||||| || |||||| || Sbjct 280624 ACATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATTGTA 280677 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||| || || |||||||||| || || |||| || | || | |||||| ||| || Sbjct 279981 AATCTACATGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTT 280040 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | ||| || ||| || | || || ||||| || || | | ||| || Sbjct 280041 GTAATCAGACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTG 280100 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || || || || || || || || | || | ||| ||| || || || Sbjct 280101 ATCAGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGA 280160 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || ||||| || || || || || || ||||| ||||| || ||||| Sbjct 280161 TGGCTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||| || || |||| || | || | |||||| ||| || || || Sbjct 280216 ATGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCA 280275 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||| || ||| || | || || ||||| || || | | ||| ||||||||| Sbjct 280276 GACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGA 280335 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || || | || | ||| ||| || || || | ||| Sbjct 280336 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCC 280395 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || || ||||| ||||| || ||||| Sbjct 280396 ACATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280445 >seq1943 Length=707543 Score = 89.7 bits (98), Expect = 9e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||| || || || | | ||| |||||||| || || || || || Sbjct 224081 TCATCAAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTG 224140 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | || | |||| || || ||||||| || || || ||||| || Sbjct 224141 TCTTGGATTTTCGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATG 224200 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 ||||| || || || || || || || |||||||||||| Sbjct 224201 GTTTTTCCCGTAAGGGTCTTCACGAAGATTTGCATTTTA 224239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899601938902800