Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2762 104 3e-16 seq2540 93.3 5e-13 seq1834 93.3 5e-13 seq18 89.7 6e-12 >seq2762 Length=14237 Score = 104 bits (114), Expect = 3e-16 Identities = 117/155 (75%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| ||||| |||||| |||||| |||||||| ||||||| ||||| ||||| ||||| Sbjct 1469 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTTTTGCCCTGCAGCGAAATCAAGTCCAT 1410 Query 868759 CCACGGGAACGGGTTGG--GCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGG 868816 || ||| ||||||| ||| | | || ||| ||| ||||| || |||||| Sbjct 1409 GAACTCGAAGGGGTTGGCAGCGCC--GAAGGCCTTGGCGCCGCCGAGGCACTGCAGCAGG 1352 Query 868817 CGGTCGGCGACAAACTCGATGTACTGGCACATGAG 868851 ||||| || || ||||||| ||||||| |||||| Sbjct 1351 CGGTCCGCCACGAACTCGACGTACTGGGCCATGAG 1317 >seq2540 Length=2452 Score = 93.3 bits (102), Expect = 5e-13 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 869741 CTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGAC 869800 ||||||||||| || ||||||||||| ||||| ||||| |||||| | || || | Sbjct 1469 CTGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGCTGCTCGTTGGCGTCCAGAGTG 1410 Query 869801 ACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCG 869860 |||||| |||| ||| || || | ||| | || || | ||||| | ||| || || Sbjct 1409 GCCCAGTCGACGAGGTCTGCACTCATGTCGATTTCTTCTGTTGTCCAAAACGAAGCTTCT 1350 Query 869861 GCCTTTTTGTACATCTCCCATACTTGCTGGT 869891 || ||||||||||| | ||| |||| |||| Sbjct 1349 GCTTTTTTGTACATGTTCCACACTTCGTGGT 1319 >seq1834 Length=313589 Score = 93.3 bits (102), Expect = 5e-13 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 509042 AGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCG-CGAGATGTTTCT 509100 |||||||||||||| |||||| | | ||| || ||| || |||| | ||| | Sbjct 225640 AGCCGCGGCTTTGTCTCCAACTCTTTCTTCTCCGGACTGT-CTCCCGACGAGTTCTTTTT 225582 Query 509101 GCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGG 509160 |||| || || |||||||||||||| ||||| ||||||||||| || |||||||| Sbjct 225581 CCACACCATGTCTGGCCGCGAGGGCCTCGTGGACACCGCCGTCAAGACTGCGGAGACGGG 225522 Query 509161 CTACATCCAGCGCCGGTGCATCAAG 509185 |||||| |||||| || ||| ||| Sbjct 225521 CTACATGCAGCGCAGGCTCATGAAG 225497 >seq18 Length=557087 Score = 89.7 bits (98), Expect = 6e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 1254351 AGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTG 1254410 || || ||| ||| | ||| ||||||||||||||||||||||| | | | |||| Sbjct 356005 AGCTCCCCGGGCAGCAGCAGCCGCACGGCGGTCTGGATCTCGCGGGAGGAAAGCGTGCGC 356064 Query 1254411 CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1254470 |||||| || | || || | |||||| ||| | ||||| ||||||||| Sbjct 356065 TTCTTGTTGTAGCGAATGAGGCGCACAGCCTCGTCTGCGAGTCTGTCGAAGATGTCGTTG 356124 Query 1254471 ACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530 | || || ||||| | ||| || ||||| | ||| ||||||||||||||| Sbjct 356125 ATGAAAGAATTCATAATGCTCATGCTTTTCTTGGAAACGCCGGTCTCGGGGTGCACCTGC 356184 Query 1254531 TTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 || ||||| ||||||||| || || | |||| Sbjct 356185 TTCAGCACTTTGTAGATGTACAGCGCGAACGA 356216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106756368253805