Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq18 150 3e-30 seq4182 125 1e-22 seq2762 104 4e-16 seq2540 91.5 2e-12 seq2794 87.8 3e-11 >seq18 Length=557087 Score = 150 bits (166), Expect = 3e-30 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||| |||||||||||| ||||| |||||||||||| || || || ||| ||| Sbjct 355958 TGTACTTGGAGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGCTGAGCTCCCCGGGCA 356017 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||||||||||||||||||||||| | | |||| |||||| || Sbjct 356018 GCAGCAGCCGCACGGCGGTCTGGATCTCGCGGGAGGAAAGCGTGCGCTTCTTGTTGTAGC 356077 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| | |||||| ||| | ||||| |||||||||| || || |||| Sbjct 356078 GAATGAGGCGCACAGCCTCGTCTGCGAGTCTGTCGAAGATGTCGTTGATGAAAGAATTCA 356137 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| ||| ||||| | ||| ||||||||||||||||| ||||| |||| Sbjct 356138 TAATGCTCATGCTTTTCTTGGAAACGCCGGTCTCGGGGTGCACCTGCTTCAGCACTTTGT 356197 Query 1485710 A 1485710 | Sbjct 356198 A 356198 >seq4182 Length=7272 Score = 125 bits (138), Expect = 1e-22 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || ||||||||||||| |||||||| ||||| || ||||||||| |||| ||||||||| Sbjct 1588 CGGTGTACTTGGTGACAGCCTTGGTGCCCTCGGAAACGGCGTGCTTGGCGAGTTCGCCGG 1647 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 | | | |||||| ||||| |||||||||||||||| | | ||| | ||||| | Sbjct 1648 GAAGCACCAGGCGGACGGCCGTCTGGATCTCGCGGGAGGAAAGCGTATCTTTTTTGTT-G 1706 Query 1485587 TGCGCGC-CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 | || ||| || || || | | | || |||| | ||| | || ||| Sbjct 1707 TATTTGCACAGCTTTCCAGCTTCCGAGGCAATTTTATCGAAAGTATCGCCAATTAAAGAG 1766 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||| ||| || || ||| |||||| ||||||||||||||||| |||||| Sbjct 1767 GTCATGATCATCATGGACTTCTTGCTGATGCCGGTTTCGGGGTGCACCTGCTTCAGCACC 1826 Query 1485706 TTG 1485708 ||| Sbjct 1827 TTG 1829 >seq2762 Length=14237 Score = 104 bits (114), Expect = 4e-16 Identities = 131/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 793891 TGACGCC--CGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTC 793948 ||||||| ||| ||| || ||||| |||||| |||||| |||||||| ||||||| Sbjct 1485 TGACGCCGGCGCGCTGG--TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTTTTGCCCTG 1428 Query 793949 GAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC 794008 ||||| ||||| ||||| || ||| |||||||| | | || ||| ||| || Sbjct 1427 CAGCGAAATCAAGTCCATGAACTCGAAGGGGTTGGCAGCGCCGAAGGCCTTGGCGCCGCC 1368 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCG 794066 ||| || ||||||||||| || ||||| || | ||||||| |||||| || ||| Sbjct 1367 GAGGCACTGCAGCAGGCGGTCCGCCACGAACTCGACGTACTGGGCCATGAGCGCTGCG 1310 >seq2540 Length=2452 Score = 91.5 bits (100), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 796213 CTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAG 796272 ||||||||||| ||||| |||||||| ||||| ||||| |||||| | || || | | Sbjct 1469 CTGGCGGCGAAGAAGGCCAGGACGTGTTTGATGAAGTGCTGCTCGTTGGCGTCCAGAGTG 1410 Query 796273 ACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCG 796332 |||||| ||| ||| || | | ||||| || || | |||||||| || || || Sbjct 1409 GCCCAGTCGACGAGGTCTGCACTCATGTCGATTTCTTCTGTTGTCCAAAACGAAGCTTCT 1350 Query 796333 GCCTTTTTGTACATCTCCCA 796352 || ||||||||||| | ||| Sbjct 1349 GCTTTTTTGTACATGTTCCA 1330 >seq2794 Length=11877 Score = 87.8 bits (96), Expect = 3e-11 Identities = 95/123 (77%), Gaps = 6/123 (5%) Strand=Plus/Plus Query 2071573 AACTGGACGACCTCGGTGCACAGGTTG--GCCGA-CATCGTGGTGCCCAGGTTCTGCTGG 2071629 ||||| ||||| ||| ||||| |||| || | || |||| ||||||| ||||||| Sbjct 2816 AACTGCACGACTTCGCAGCACAAGTTGCTGCTGCGCAGCGTG---CCCAGGTGCTGCTGG 2872 Query 2071630 TTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGC 2071689 ||||| || ||||| ||||| |||| ||||||||| || | ||||| ||||||||| Sbjct 2873 TTGCTCTTCCGGTTGCACGCGTCTTTGTACAGCATGTACGGGGTCCCCGTTTCGATCTGC 2932 Query 2071690 GCC 2071692 ||| Sbjct 2933 GCC 2935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915750162672935