Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq18 122 2e-22 seq1943 89.7 1e-12 >seq18 Length=557087 Score = 122 bits (134), Expect = 2e-22 Identities = 155/213 (73%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTG 206220 |||| |||| ||||| ||| || || || ||||| || || |||||| | || ||| Sbjct 280679 GCTACAATG---CAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTG 280623 Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280 || || || || ||||| || ||| ||||||||| || || || || ||| Sbjct 280622 GAGCCATCAGATACCATCGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCT 280563 Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340 || || || | |||||||||||||| |||||| |||| ||||||||||| || | Sbjct 280562 CCTGATCAGCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCT 280503 Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||| | ||||||||||| || |||||| Sbjct 280502 GATTACAACATTCAGAAAGAGTCCACCCTTCAC 280470 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || |||||| | || ||||| || ||| Sbjct 280214 CAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCAGAC 280155 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||| || || || || ||| || || || Sbjct 280154 ACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAG 280095 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| |||| ||||||||||| || | ||||||||| | Sbjct 280094 CGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATT 280035 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || |||||| Sbjct 280034 CAGAAAGAGTCCACCCTTCAC 280014 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || |||||| | || ||||| || ||| Sbjct 280442 CAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCAGAC 280383 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||| || || || || ||| || || || Sbjct 280382 ACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAG 280323 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| |||| ||||||||||| || | ||||||||| | Sbjct 280322 CGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATT 280263 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || |||||| Sbjct 280262 CAGAAAGAGTCCACCCTTCAC 280242 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 |||||| || ||||||||||| | || || |||| || ||||||||||| |||||||| Sbjct 280014 GTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCAGCTG 280073 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||| |||||||||||||| || || ||| Sbjct 280074 CTTGCCGGCGAAGATAAGACGCTGCTGA 280101 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 |||||| || ||||||||||| | || || |||| || ||||||||||| |||||||| Sbjct 280242 GTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCAGCTG 280301 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||| |||||||||||||| || || ||| Sbjct 280302 CTTGCCGGCGAAGATAAGACGCTGCTGA 280329 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 |||||| || ||||||||||| | || || |||| || ||||||||||| |||||||| Sbjct 280470 GTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCAGCTG 280529 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||| |||||||||||||| || || ||| Sbjct 280530 CTTGCCGGCGAAGATAAGACGCTGCTGA 280557 >seq1943 Length=707543 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || |||||||| |||||| | || |||||| ||| ||||| ||||| Sbjct 224220 AAGACCCTTACGGGAAAAACCATCACTCTCGACGTGGAACCTTCCGACACCATCGAAAAT 224161 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || || || || ||| || || | ||||||||| Sbjct 224160 GTGAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCTGATCAGCAGCGTCTTATCTTC 224101 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| | || || || |||||| | | ||||||||| | ||||| || Sbjct 224100 GCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGATTACAACATTCAGAAGGAAAGC 224041 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 224040 ACCCTTCAC 224032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181750162201465