Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2794 109 5e-19 seq18 102 8e-17 >seq2794 Length=11877 Score = 109 bits (120), Expect = 5e-19 Identities = 342/519 (66%), Gaps = 18/519 (3%) Strand=Plus/Plus Query 147259 CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTT 147318 ||||| |||| |||||| ||||| | ||||||| |||| |||||| || | || Sbjct 2570 CGCAGCAGCAGAAAGGCGTCGGCGAGGCCCTGGACGCCGAGGCCGATGGGCCTGTGGCGG 2629 Query 147319 TCGTTGCTGCGCTTCGCGC-TCGCT-ATGGGATAGTGGTTGCGATCAATAATCTTGTTGA 147376 |||||||| | ||||| ||| | ||| ||| |||||| || || || ||||| | Sbjct 2630 AAGTTGCTGC--TGCGCGCCTCGGGGACGGGGTAGAAGTTGCGGTCGATGATGTTGTTCA 2687 Query 147377 GGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTT 147436 ||| ||| | || | ||||| |||||| || ||| | || ||| Sbjct 2688 AGTTGCGCGTCATGACGGCCACGACGCGCTTGAGGCCCTCGAAGTCG-AAGGCGCG-CTT 2745 Query 147437 CGACACGT--ACGCATTGGTTCACGGCGATA--GACGCCAGATTGCAGACGGCCGTCTCT 147492 || | ||| ||| | | || |||| | || |||| |||||||||||| ||| Sbjct 2746 CGCCGCGTCCACGAAGCGCGGCA--GCGACACGGAGGCCAAGTTGCAGACGGCCACCTCC 2803 Query 147493 TCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAA 147552 |||| | | || ||||||||| |||| ||||| |||||||| | |||| Sbjct 2804 TCGGGGCTGGTGAACTGCACGACTTCGCAGCACAAGTTGCTGCTGCGCAGCGTGCCCAGG 2863 Query 147553 TTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTC 147612 | ||||| ||||| ||||| ||||||||||||||| | ||||||||||| || || Sbjct 2864 TGCTGCTGGTTGCTCTTCCGGTTGCACGCGTCTTTGTACAGCATGTACGGGGTCCCCGTT 2923 Query 147613 TCGACTTGCGTTT---CAACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGA 147669 |||| |||| | || | |||| ||| | |||||| | |||| | |||| Sbjct 2924 TCGATCTGCGCCTGCAGAATGGCGAACC---ACAGCTTCTGCGCGCCCACCGTCCGCCGC 2980 Query 147670 TAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCG 147729 ||| | ||||||| ||||||| | ||| ||||| |||| | | || Sbjct 2981 CCCTTCCCCGCCCGTTCGTACTCTTCGTACAGCGCCTCGAACTCCGCGCCCCACCGCTCC 3040 Query 147730 GCAAGGCCGGGACACTGATGCGGACACATCAGCGACCAC 147768 | || ||||| |||| ||| |||||||||| |||| Sbjct 3041 GTCAGCCCGGGGCACTCGCACGGGCACATCAGCGTCCAC 3079 >seq18 Length=557087 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| ||||| || | | | |||||||| ||||||||||| || || || | Sbjct 280455 CAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCT 280514 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||| || ||||| || |||| |||| |||||||| ||||| ||||| ||||| || Sbjct 280515 TCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTC 280574 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| |||| | ||| | ||||| | |||||||| |||| || Sbjct 280575 CTTGTCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCACATCGAGAGT 280634 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || ||||| || | || |||||||| Sbjct 280635 GATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 280673 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| ||||| || | | | |||||||| ||||||||||| || || || | Sbjct 279999 CAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCT 280058 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||| || ||||| || |||| |||| |||||||| ||||| ||||| ||||| || Sbjct 280059 TCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTC 280118 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| |||| | || | || || | |||||||| |||| || Sbjct 280119 CTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGT 280178 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || || || ||||| | || ||||||||| Sbjct 280179 GATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCATG 280218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| ||||| || | | | |||||||| ||||||||||| || || || | Sbjct 280227 CAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCT 280286 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||| || ||||| || |||| |||| |||||||| ||||| ||||| ||||| || Sbjct 280287 TCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTC 280346 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| |||| | || | || || | |||||||| |||| || Sbjct 280347 CTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGT 280406 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || || || || ||||| | || ||||||||| Sbjct 280407 GATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCATG 280446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476583407609400