Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18 127 3e-23 seq4182 100 4e-15 seq2762 86.0 9e-11 seq2540 86.0 9e-11 >seq18 Length=557087 Score = 127 bits (140), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||||| ||||||||||||||| |||| || | ||||| || | Sbjct 356201 ATCTACAAAGTGCTGAAGCAGGTGCACCCCGAGACCG----GCGTT--TCCAAGAAAAGC 356148 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || ||||| || || |||||||||| ||||| | ||| |||||| | Sbjct 356147 ATGAGCATTATGAATTCTTTCATCAACGACATCTTCGACAGACTCGCAGACGAGGCTGTG 356088 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| |||| ||||||| |||| | | | ||||||||||||||||||||| Sbjct 356087 CGCCTCATTCGCTACAACAAGAAGCGCACGCTTTCCTCCCGCGAGATCCAGACCGCCGTG 356028 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| | ||| ||| || || || ||||||||||||||||||||||| Sbjct 356027 CGGCTGCTGCTGCCCGGGGAGCTCAGCAAGCACGCCGTCTCCGAGGGCACCA 355976 >seq4182 Length=7272 Score = 100 bits (110), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| ||||||||||||||| ||||| |||| | || |||||| Sbjct 1834 ATCTTCAAGGTGCTGAAGCAGGTGCACCCCGAAACCGG-----CATCAGC-AAGAAGTCC 1781 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| ||| || | ||| | |||| || | | | || || || Sbjct 1780 ATGATGATCATGACCTCTTTAATTGGCGATACTTTCGATAAAATTGCCTCGGAAGCTGGA 1721 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| | |||||| | ||| | | | |||||||||||||| ||||| Sbjct 1720 AAGCTGTGCAAATACAACAAAAAAGATACGCTTTCCTCCCGCGAGATCCAGACGGCCGTC 1661 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | | | ||||||||| |||| ||||||||| ||||||||||||| Sbjct 1660 CGCCTGGTGCTTCCCGGCGAACTCGCCAAGCACGCCGTTTCCGAGGGCACCA 1609 >seq2762 Length=14237 Score = 86.0 bits (94), Expect = 9e-11 Identities = 82/103 (80%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTT--GCCGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||||| || | ||||| |||||| || |||| ||||| || |||| |||||| ||| Sbjct 255 TTTGCGGAAAGACTCGT-GGCTTTTTGCTGCGTGGAGGGGATTCTTTTTTCGGGCTCTTT 313 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 ||||||||| || |||||||| |||||||| || ||||| ||| Sbjct 314 CTGCGCCATTTTCTGGCTCAAAAAGCGCGGACTTATGCCGGGT 356 >seq2540 Length=2452 Score = 86.0 bits (94), Expect = 9e-11 Identities = 82/103 (80%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 1456173 TTTGCCGAGCGGCTCGTCGGCTTT--GCCGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||||| || | ||||| |||||| || |||| ||||| || |||| |||||| ||| Sbjct 2251 TTTGCGGAAAGACTCGT-GGCTTTTTGCTGCGTGGAGGGGATTCTTTTTTCGGGCTCTTT 2309 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 ||||||||| || |||||||| |||||||| || ||||| ||| Sbjct 2310 CTGCGCCATTTTCTGGCTCAAAAAGCGCGGACTTATGCCGGGT 2352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177361252175730