Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1943 125 7e-24 seq18 111 2e-19 seq2794 95.1 1e-14 >seq1943 Length=707543 Score = 125 bits (138), Expect = 7e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||| |||||| ||||||||||| || || || ||| || || || Sbjct 224032 GTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTG 224091 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || ||||| || || | |||||||||||| ||||| ||||| || || ||||| ||||| Sbjct 224092 CTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTT 224151 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | |||||||| | ||||||||||||||| |||||||| || || Sbjct 224152 CGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCCGT 224211 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTT 134716 | || || ||||| ||||||||||| Sbjct 224212 AAGGGTCTTCACGAAGATTTGCATTTT 224238 >seq18 Length=557087 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || |||| ||| | ||| || ||||| || || ||||||||||| || | | Sbjct 279991 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280050 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | | || || ||||| ||||| || || || | |||||||||||| || || Sbjct 280051 AGCGTCCTTCCA-TCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280109 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || ||||| ||| || || || | ||||| || | ||||| Sbjct 280110 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCAC 280169 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || || || | ||||| || || || ||||| Sbjct 280170 ATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || |||| ||| | ||| || ||||| || || ||||||||||| || | | Sbjct 280219 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280278 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | | || || ||||| ||||| || || || | |||||||||||| || || Sbjct 280279 AGCGTCCTTCCA-TCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280337 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || ||||| ||| || || || | ||||| || | ||||| Sbjct 280338 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCAC 280397 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || || || | ||||| || || || ||||| Sbjct 280398 ATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280445 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || |||| ||| | ||| || ||||| || || ||||||||||| || | | Sbjct 280447 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280506 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | | || || ||||| ||||| || || || | |||||||||||| || || Sbjct 280507 AGCGTCCTTCCA-TCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGG 280565 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || ||||| ||| || || || | || || || | ||||| Sbjct 280566 AATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCAC 280625 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 |||||||| ||||| || || || | ||| || || || || |||||| Sbjct 280626 ATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 280674 >seq2794 Length=11877 Score = 95.1 bits (104), Expect = 1e-14 Identities = 251/373 (67%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 8253 CGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCA-AA 8311 |||||| || | ||||||||||||||||||||||| |||||| || ||||| || | Sbjct 2926 CGAAACGGGGACCCCGTACATGCTGTACAAAGACGCGTGCAACCGGAAGAGCAACCAGCA 2867 Query 8312 GCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGC 8371 || || ||||||| | | ||||||| ||||| ||| | || |||| || | | Sbjct 2866 GC-ACCTGGGCACGCTGCGCAGCAGCAACTTGTGCTGCGAAGTCGTGCAGTTCACCAGCC 2808 Query 8372 CCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGT-GTTTAAACGCGTTCGTTGATCGA 8430 |||| || |||||||| ||||| | || || |||| | | ||| ||||| || || Sbjct 2807 CCGAGGAGGTGGCCGTCTGCAACTTGGCCTCCGTGTCGCTGCCGCGC-TTCGTGGA-CGC 2750 Query 8431 CGCTCA-AACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGACGGTACGCAA 8489 || | | | | |||||| || | || || |||| || | | ||||| Sbjct 2749 GGCGAAGCGCGCCTTCGACTTCGAGGGCCTCAAGCGCGTCGTGGCCGTCATGACGCGCAA 2690 Query 8490 TTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGC-GTATCGAACA 8548 || | |||||| || ||| || || ||| | || |||||| | | | ||| Sbjct 2689 CTTGAACAACATCATCGACCGCAACTTCTACCCCGTCCCCGAGGCGCGCAGCAGC-AACT 2631 Query 8549 TGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGC 8608 | |||||||| ||| | ||| | ||||| || || || |||||||| ||| || ||| Sbjct 2630 TCCGCCACAGGCCCATCGGCCTCGGCGTCCAGGGCCTCGCCGACGCCTTTCTGCTGCTGC 2571 Query 8609 GCCTCCCCTACGA 8621 || ||||| ||| Sbjct 2570 GCTACCCCTTCGA 2558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505368928955800