Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq18 156 1e-32 seq1943 113 1e-19 seq45 100 9e-16 seq1597 95.1 4e-14 seq76 87.8 5e-12 >seq18 Length=557087 Score = 156 bits (172), Expect = 1e-32 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || |||||||| ||||| || |||||||| | || | ||||| || | Sbjct 280011 CAAG-TGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCA 280069 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || || ||||| ||||| ||||||||||||||||| || || || ||||||| Sbjct 280070 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 280129 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| ||||| | || ||||| || || || || || | ||||| | Sbjct 280130 TCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGTCTTCC 280189 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || ||||| ||||| |||||||| Sbjct 280190 CCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 156 bits (172), Expect = 1e-32 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || |||||||| ||||| || |||||||| | || | ||||| || | Sbjct 280239 CAAG-TGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCA 280297 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || || ||||| ||||| ||||||||||||||||| || || || ||||||| Sbjct 280298 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 280357 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| ||||| | || ||||| || || || || || | ||||| | Sbjct 280358 TCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGTCTTCC 280417 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || ||||| ||||| |||||||| Sbjct 280418 CCGTGAGGGTTTTCACAAAGATCTGCAT 280445 Score = 152 bits (168), Expect = 2e-31 Identities = 160/209 (77%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || |||||||| ||||| || |||||||| | || | ||||| || | Sbjct 280467 CAAG-TGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCA 280525 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || || ||||| ||||| ||||||||||||||||| || || || ||||||| Sbjct 280526 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 280585 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| || || | ||| ||||| || || || || || | ||||| | Sbjct 280586 TCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCACATCGAGAGTGATGGTCTTCC 280645 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || ||||| ||||||||| Sbjct 280646 CTGTAAGAGTCTTCACAAAGATCTGCATT 280674 >seq1943 Length=707543 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 140547 TCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAG 140606 || || ||||| || ||||| || | || | || || |||||||| ||||| || ||| Sbjct 224045 TCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGCTTTCCTGCGAAG 224104 Query 140607 ATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTA 140666 || ||||| ||||||||||| || || || || || || || ||||| || || ||||| Sbjct 224105 ATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTCACATTT 224164 Query 140667 TCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACA 140726 || || | || || ||||| || || || || | || ||||| || || || || || Sbjct 224165 TCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCCGTAAGGGTCTTCACG 224224 Query 140727 AAAATCTGCATT 140738 || || |||||| Sbjct 224225 AAGATTTGCATT 224236 >seq45 Length=81829 Score = 100 bits (110), Expect = 9e-16 Identities = 193/281 (69%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATT 349589 |||||||||| | ||| | |||||| | | || ||||||||| |||| || ||| || | Sbjct 33109 ACCCGAAGAAGTCTCAGCTATGGTTCTGGGAAAGATGAAGGAAGTTGCGGAGAGC-TACT 33167 Query 349590 TAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGC 349649 | || || ||| | | || || | ||||| || ||||| || || ||||| |||| Sbjct 33168 TGGGCAAAGAAGTCAAGAACGCCGTGGTCACTGTCCCGGCCTACTTCAACGATGCTCAGC 33227 Query 349650 GTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATG 349709 | || || || || ||||| ||| || || | || || | | || || || | Sbjct 33228 GCCAGGCCACTAAGGACGCTGGTGCCATCGCTGGCCTCAACGTCATCCGTATCATCAACG 33287 Query 349710 AACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTA 349769 | ||||| || ||||| ||||| || || || || || | | ||| ||||| | | Sbjct 33288 AGCCCACCGCCGCAGCCATTGCCTACGGTCTGGACAAGAAG---GAC---GAAAAGACCA 33341 Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCA 349810 ||||| | | ||| | ||||||||||| || ||||| ||| Sbjct 33342 TTCTTGTGTACGATCTTGGTGGTGGTACCTTCGATGTCTCA 33382 >seq1597 Length=338209 Score = 95.1 bits (104), Expect = 4e-14 Identities = 77/88 (88%), Gaps = 4/88 (5%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CG-AAAG-CCT 423821 |||| ||||||||||| ||| ||||||||| ||||||||||| |||| || |||| ||| Sbjct 155177 AGCACGGATGCCCGAGCGGT-TAAGGGGGCGGACTTAAGATCCCCTGGTCGTAAAGACCT 155119 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATT 423849 ||||||||| || ||||||||||||||| Sbjct 155118 CGTGGGTTCGAATCCCACTCCGTGCATT 155091 >seq76 Length=444624 Score = 87.8 bits (96), Expect = 5e-12 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTC 423822 |||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || | | || | Sbjct 112841 AGCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGCACGTCCGC 112782 Query 423823 GTGGGTTCAAACCCCACTCCGTGCATTTAT 423852 ||||||||||| |||||| |||||||| || Sbjct 112781 GTGGGTTCAAATCCCACTTCGTGCATTGAT 112752 Score = 84.2 bits (92), Expect = 7e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 423766 GCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTCG 423823 ||| ||||| ||||||||||||||| | |||||| ||| |||| ||| || | | || || Sbjct 111991 GCACGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTGGACGTACGTCCGCG 111932 Query 423824 TGGGTTCAAACCCCACTCCGTGCAT 423848 |||||||||| |||||| ||||||| Sbjct 111931 TGGGTTCAAATCCCACTTCGTGCAT 111907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515163832770995