Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2794 123 3e-23 seq2762 87.8 2e-12 seq2540 87.8 2e-12 >seq2794 Length=11877 Score = 123 bits (136), Expect = 3e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 |||||||||||| ||||||||||| |||| ||| ||||| | ||||| ||||| | Sbjct 3372 CATGAAGAGGTCTGGGATCCACAGCGCCGGGAAAAGGTCTCTCGCGCGCATTTCCTCTTT 3431 Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 ||| |||||| || | || ||||| || | ||||| || ||||||||||||| || Sbjct 3432 GCCGTGGTTCTTCCGAATGTCCAGAAACTCAAAAATGTCTGCATGCCACGGCTCCACGTA 3491 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 | |||| ||||| ||||||||||| ||||||| ||||| || | || || ||| Sbjct 3492 CACCGCGAGGCTCCCCTTCCGCTTGCCGCCCCCCTGGTCCACGTATCGCGACGCGTCGTT 3551 Query 79563 GAAAAC 79568 ||| || Sbjct 3552 GAAGAC 3557 Score = 111 bits (122), Expect = 2e-19 Identities = 293/440 (67%), Gaps = 22/440 (5%) Strand=Plus/Plus Query 78786 GGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTC 78845 |||||||| ||| | |||||||||| |||||||| ||| |||| || | ||| Sbjct 2500 GGCCGCGTAGTAAATGCACTCGAAGATGTGGGCGTTGAGCTGGCGAGCCTGGGGCGAGTC 2559 Query 78846 GAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGG 78905 ||| | || |||| || ||| | ||||| |||||||||||||||| |||| || Sbjct 2560 GAAGGGGTAGCGCAGCAGCAGAAAGGCGTCGGCGAGGCCCTGGACGCCGAGGCCGATGGG 2619 Query 78906 TCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGG---TCGGGTAAAAGTTCCGATCGAT 78962 | |||||| | |||||| | || |||||||| ||||| ||||| || ||||| Sbjct 2620 CCTGTGGCGGAAGTTGCTGCTGCG---CGCCTCGGGGACGGGGTAGAAGTTGCGGTCGAT 2676 Query 78963 GACGCGGTTCAGGTTACGCG---TGACGACC-CGAGTCACCTCGTACAATTTGGCGAAAT 79018 || | ||||| ||| |||| ||||| || ||| | | | | | |||| | Sbjct 2677 GATGTTGTTCAAGTTGCGCGTCATGACGGCCACGACGCGCTTGAGGCCCT----CGAAGT 2732 Query 79019 CAAA---ATGATT---TCCTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACA 79072 | || | || | | | ||| ||| || ||| || |||| |||||| | Sbjct 2733 CGAAGGCGCGCTTCGCCGCGTCCACGAAGCGCGGCAGCGACACGGAGGCCAAGTTGCAGA 2792 Query 79073 CGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTG- 79131 ||||| ||| || ||||| | | || | || ||| |||||| || | | | Sbjct 2793 CGGCCACCTCCTCGGGGCTGGTGAACTGCACGACTTCGCAGCACAAGTT-GCTGCTGCGC 2851 Query 79132 ATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTAC 79191 | ||||| | || || ||||||||||||| ||| || ||||| ||||| ||||||| Sbjct 2852 AGCGTGCCCAGGTGCTGCTGGTTGCTCTTCCGGTTGCACGCGTCTTTGTACAGCATGTAC 2911 Query 79192 GGCGTCCCGGTCTCAACCTG 79211 || ||||| || || | ||| Sbjct 2912 GGGGTCCCCGTTTCGATCTG 2931 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20015 GTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCG 20074 ||| | ||||| || |||| | ||||||| || ||||| ||||| | | |||| Sbjct 2703 GTCATGACGCGCAACTTGAACAACATCATCGACCGCAACTTCTACCCCGTCCCCGAGGCG 2644 Query 20075 CGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTT 20134 |||| || | |||||| |||| |||| |||||||||||||||| ||||||| Sbjct 2643 CGCAGCAGCAACTTCCGCCACAGGCCCATCGGCCTCGGCGTCCAGGGCCTCGCCGACGCC 2584 Query 20135 TTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATC 20194 || || |||| || | | |||||| ||| |||| ||| |||||||| |||| Sbjct 2583 TTTCTGCTGCTGCGCTACCCCTTCGACTCGCCCCAGGCTCGCCAGCTCAACGCCCACATC 2524 Query 20195 TTCGAGGCCGTGTACCACGCGGCC 20218 |||||| | | ||| |||||||| Sbjct 2523 TTCGAGTGCATTTACTACGCGGCC 2500 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 19436 GTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTC 19495 ||||||||| || || | | ||||| |||||||||||||||| || ||||| || Sbjct 3557 GTCTTCAACGACGCGTCGCGATACGTGGACCAGGGGGGCGGCAAGCGGAAGGGGAGCCTC 3498 Query 19496 GCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAAC 19555 || | ||| | ||||| ||||| || ||| | | || || || || | || |||| Sbjct 3497 GCGGTGTACGTGGAGCCGTGGCATGCAGACATTTTTGAGTTTCTGGACATTCGGAAGAAC 3438 Query 19556 CAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTA 19615 || || | ||||| |||||| | ||||| ||| |||| ||||||| || ||||| Sbjct 3437 CACGGCAAAGAGGAAATGCGCGCGAGAGACCTTTTCCCGGCGCTGTGGATCCCAGACCTC 3378 Query 19616 TTCATG 19621 |||||| Sbjct 3377 TTCATG 3372 >seq2762 Length=14237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/126 (76%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 59950 AGTGGATGAGTCCTGGAGCA--TCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGA 60007 ||||||||| | | |||| || ||||| || | ||| | |||||| |||||||| Sbjct 232 AGTGGATGAACC--GCAGCAAGTCTTTTGCGGAAAGACTCGTGGCTTTTTGCTGCGTGGA 289 Query 60008 AGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCAT 60067 || || | || || ||||| ||||| || |||||||||||||||||||| || || || Sbjct 290 GGGGATTCTTTTTTCGGGCTCTTTCTGCGCCATTTTCTGGCTCAAAAAGCGCGGACTTAT 349 Query 60068 GCCGGG 60073 |||||| Sbjct 350 GCCGGG 355 >seq2540 Length=2452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/126 (76%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 59950 AGTGGATGAGTCCTGGAGCA--TCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGA 60007 ||||||||| | | |||| || ||||| || | ||| | |||||| |||||||| Sbjct 2228 AGTGGATGAACC--GCAGCAAGTCTTTTGCGGAAAGACTCGTGGCTTTTTGCTGCGTGGA 2285 Query 60008 AGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCAT 60067 || || | || || ||||| ||||| || |||||||||||||||||||| || || || Sbjct 2286 GGGGATTCTTTTTTCGGGCTCTTTCTGCGCCATTTTCTGGCTCAAAAAGCGCGGACTTAT 2345 Query 60068 GCCGGG 60073 |||||| Sbjct 2346 GCCGGG 2351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548492814147600