Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2794 111 2e-19 seq1928 96.9 4e-15 >seq2794 Length=11877 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 53513 GTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTC 53572 ||||||||| || || | || ||||| ||||||| || || ||||| |||||| || Sbjct 3557 GTCTTCAACGACGCGTCGCGATACGTGGACCAGGGGGGCGGCAAGCGGAAGGGGAGCCTC 3498 Query 53573 GCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAAT 53632 || | ||| | ||||||||||| || |||||| | |||||||| || | || ||| Sbjct 3497 GCGGTGTACGTGGAGCCGTGGCATGCAGACATTTTTGAGTTTCTGGACATTCGGAAGAAC 3438 Query 53633 CAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTC 53692 || || | || || |||||| | ||||| || | || |||||||| || |||||| Sbjct 3437 CACGGCAAAGAGGAAATGCGCGCGAGAGACCTTTTCCCGGCGCTGTGGATCCCAGACCTC 3378 Query 53693 TTCATGCAA 53701 |||||| || Sbjct 3377 TTCATGAAA 3369 >seq1928 Length=265371 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 117352 CGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTG 117411 || ||||||||||||| ||||| | || |||||||||||| ||||||||| || Sbjct 206399 CGAACCGAATTGTCCAACAGGCTCAAGGAAATTCAGGTTGTTGCTGCCCACAAACCGCTG 206458 Query 117412 AGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC 117471 |||| | | | || || ||| ||| | || || ||||| || || |||| || Sbjct 206459 CGCCATGGTTATGATAGTTTGTTGCAGGGACTGTTCTCCGTGGTGGTAAGCACTCTGTTC 206518 Query 117472 CGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCA 117531 || |||||||| | || ||| || ||||||| || | | || || ||||||| Sbjct 206519 GGCTACGTAGCCTGACAACTGGGCGACCTTCAATTCAGCCTTCGTATTTTTCTTGAAAAC 206578 Query 117532 GGCATAAATCACCTTGCGCTGACTTGGCTT--CAGACCATCCGCCACGTGAGGGATCGAA 117589 ||| | | ||| |||||||| | | ||| ||| |||||| | | |||||||| ||| Sbjct 206579 TGCAAACAGCACTTTGCGCTG-CCCGACTTTCCAG-CCATCCACAAGTTGAGGGATGGAA 206636 Query 117590 CGCT 117593 |||| Sbjct 206637 CGCT 206640 Score = 93.3 bits (102), Expect = 5e-14 Identities = 196/290 (68%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCG-GGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||||||||||| || || || | |||||| || || ||| | || || || || || Sbjct 206352 GTGAAGATGTAGCGCGGTGC-AGACGCATCTTTCCCTCCTTCTTTCCTCGAACCGAATTG 206410 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 |||| ||||| |||| || ||||||||| |||||| || ||| |||| | | Sbjct 206411 TCCAACAGGCTCAAGGAAATTCAGGTTGTTGCTGCCCACAAACCGCTGCGCCATGGTTAT 206470 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || ||||| | ||| |||||||| || || |||| || || | ||| || Sbjct 206471 GATAGTTTGTTGCAGGGACTGTTCTCCGTGGTGGTAAGCACTCTGTTCGGCTACGTAGCC 206530 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 | |||||| || ||||||| || | | || || ||||||| | || | | ||| Sbjct 206531 TGACAACTGGGCGACCTTCAATTCAGCCTTCGTATTTTTCTTGAAAACTGCAAACAGCAC 206590 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCT 152317 |||||||| |||| | || ||||| | ||||| || ||||||| Sbjct 206591 TTTGCGCTGCCCGACTTTCCAGCCATCCACAAGTTGAGGGATGGAACGCT 206640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547184090467000