Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq18 150 2e-31 seq1943 111 1e-19 >seq18 Length=557087 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || || || ||| | || ||||| || ||||| || || Sbjct 280218 CATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATC 280159 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || ||| ||||| ||||| || ||||| || || ||||| Sbjct 280158 AGACACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCA 280099 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || | ||| | || |||||||| Sbjct 280098 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAA 280039 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| ||| | || ||||| |||| || | |||||||| Sbjct 280038 CATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCCTGAGAGGTGGCAT 279988 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || || || ||| | || ||||| || ||||| || || Sbjct 280446 CATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATC 280387 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || ||| ||||| ||||| || ||||| || || ||||| Sbjct 280386 AGACACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCA 280327 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || | ||| | || |||||||| Sbjct 280326 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAA 280267 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| ||| | || ||||| |||| || | |||||||| Sbjct 280266 CATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCCTGAGAGGTGGCAT 280216 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || ||| | || ||||| || ||||| || || Sbjct 280673 ATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280614 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||| ||||| ||||| || ||||| || || ||||| Sbjct 280613 GATACCATCGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAG 280554 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | ||| | || ||||||||| Sbjct 280553 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAAC 280494 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | || ||||| |||| || | |||||||| Sbjct 280493 ATTCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCCTGAGAGGTGGCAT 280444 >seq1943 Length=707543 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || || | || ||||| || |||||||| ||| Sbjct 224235 ATGCAAATCTTCGTGAAGACCCTTACGGGAAAAACCATCACTCTCGACGTGGAACCTTCC 224176 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| |||||||| || ||||| || || ||||| Sbjct 224175 GACACCATCGAAAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCTGATCAG 224116 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || ||| | || ||| | ||| |||| ||||||||| Sbjct 224115 CAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGATTACAAC 224056 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| ||||| ||| | || ||||| Sbjct 224055 ATTCAGAAGGAAAGCACCCTTCACTTGGT 224027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434893038820800