Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1943 104 2e-17 seq18 102 7e-17 >seq1943 Length=707543 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||||| || || || || || ||||| | ||| || | |||||||| Sbjct 224027 ACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCA 224086 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || || || || || |||||||||||||| || | || | || ||| ||||| | Sbjct 224087 AGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGG 224146 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 |||||| || | | | | || ||| | |||||||| | ||||| ||||| Sbjct 224147 ATTTTCGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTT 224206 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || || || || ||||||||||| || Sbjct 224207 CCCGTAAGGGTCTTCACGAAGATTTGCATTTT 224238 >seq18 Length=557087 Score = 102 bits (112), Expect = 7e-17 Identities = 171/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 39042 CTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTG 39101 || |||| || || ||| ||||| | ||| | |||||| || || ||| |||||| || Sbjct 279977 CTCAAATCTA--CATGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTG 280034 Query 39102 TATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACG 39161 || || ||||| | || || | | | || || ||||| ||||| || || |||||||| Sbjct 280035 AATGTTGTAATCAGACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACG 280094 Query 39162 CTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCG 39220 |||||| || | || | || ||| |||||| ||| | | || || | || | | | Sbjct 280095 CTGCTGATCAGGAGGAATGCCCTCCTTGTCC-TGAATCTTTGCCTTCACATTCTCAATGG 280153 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || | |||||| || | ||||| | || ||||| || ||||| |||||||| | Sbjct 280154 TGTCTGATGGCTCCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCT 280213 Query 39281 GCAT 39284 |||| Sbjct 280214 GCAT 280217 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | ||| | |||||| || || ||| |||||| || || || ||||| Sbjct 280215 CATGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATC 280274 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || | | | || || ||||| ||||| || || |||||||||||||| || | Sbjct 280275 AGACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGG 280334 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| | | || || | || | | || || | || Sbjct 280335 AGGAATGCCCTCCTTGTCC-TGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCT 280393 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || | ||||| | || ||||| || ||||| |||||||| ||||| Sbjct 280394 CCACATCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280445 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | ||| | |||||| || || ||| |||||| || || || ||||| Sbjct 280443 CATGCCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATC 280502 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || | | | || || ||||| ||||| || || |||||||||||||| || | Sbjct 280503 AGACAGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGG 280562 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| | | || || | | | | ||||| | || Sbjct 280563 AGGAATGCCCTCCTTGTCC-TGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCT 280621 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || | ||||| | || || || || || || |||||||| ||||| Sbjct 280622 CCACATCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCAT 280673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429521178319145