Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq18 116 3e-21 seq1943 100 2e-16 >seq18 Length=557087 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||||||||| || || ||||||||||| || || | | Sbjct 280217 ATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280158 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | || ||||| || || | || || ||||| Sbjct 280157 GACACCATTGAGAATGTGAAGGCAAAGA-TTCAGGACAAGGAGGGCATTCCTCCTGATCA 280099 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || ||||| || | | | || | |||||||| Sbjct 280098 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAA 280039 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 280038 CATTCAGAAAGAGTCCAC 280021 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||||||||| || || ||||||||||| || || | | Sbjct 280445 ATGCAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCA 280386 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | || ||||| || || | || || ||||| Sbjct 280385 GACACCATTGAGAATGTGAAGGCAAAGA-TTCAGGACAAGGAGGGCATTCCTCCTGATCA 280327 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || ||||| || | | | || | |||||||| Sbjct 280326 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAA 280267 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 280266 CATTCAGAAAGAGTCCAC 280249 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || ||||||||| || || || || || || || || || ||||||||||| || || | Sbjct 280677 TACAATGCAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCC 280618 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | |||| | || ||| ||| ||||| || || | || || || Sbjct 280617 ATCAGATACCATCGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGA 280558 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| || ||||| || | | | || | ||||| Sbjct 280557 TCAGCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTA 280498 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 280497 CAACATTCAGAAAGAGTCCAC 280477 >seq1943 Length=707543 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 ||||||||| || ||||| || ||||| ||||||||||| ||||||||||| || || | Sbjct 224239 TAAAATGCAAATCTTCGTGAAGACCCTTACGGGAAAAACCATCACTCTCGACGTGGAACC 224180 Query 23667 CACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | |||| | || ||||| ||||| || || | ||||| || Sbjct 224179 TTCCGACACCATCGAAAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCTGA 224120 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || || || || ||||| || |||| | ||| | ||||| Sbjct 224119 TCAGCAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGATTA 224060 Query 23787 CAACATACAAAAAGA 23801 |||||| || || || Sbjct 224059 CAACATTCAGAAGGA 224045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337990382569820