Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq18 143 6e-29 seq1943 141 2e-28 seq4665 122 2e-22 seq3816 122 2e-22 seq1834 122 2e-22 >seq18 Length=557087 Score = 143 bits (158), Expect = 6e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || ||||| ||||| || | |||||||| | || || || ||||| Sbjct 280461 CAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATC 280520 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| || ||||||||||| || || || || || ||||| || |||||||| Sbjct 280521 CTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 280580 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || |||||| ||||||| ||||||||| ||||| | ||||| || | ||||| || Sbjct 280581 CTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCACATCGAGAGTGATGGT 280640 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 ||| || || | ||| || | || | |||||| || Sbjct 280641 CTTCCCTGTAAGAGTCTTCACAAAGATCTGCATTGTA 280677 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || ||||| ||||| || | |||||||| | || || || ||||| Sbjct 280005 CAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATC 280064 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| || ||||||||||| || || || || || ||||| || |||||||| Sbjct 280065 CTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 280124 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || |||||| ||||||| || ||||||||||| | ||||| || | ||||| || Sbjct 280125 CTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGT 280184 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| ||||| | ||||| Sbjct 280185 CTTCCCCGTGAGGGTTTT 280202 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || ||||| ||||| || | |||||||| | || || || ||||| Sbjct 280233 CAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATC 280292 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| || ||||||||||| || || || || || ||||| || |||||||| Sbjct 280293 CTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 280352 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || |||||| ||||||| || ||||||||||| | ||||| || | ||||| || Sbjct 280353 CTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGT 280412 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| ||||| | ||||| Sbjct 280413 CTTCCCCGTGAGGGTTTT 280430 >seq1943 Length=707543 Score = 141 bits (156), Expect = 2e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || ||| ||| || || | |||||||| | | ||| || || || || || || Sbjct 224032 GTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTG 224091 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||||||||| || || || || ||||| || || |||||||||||||| || Sbjct 224092 CTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTT 224151 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||||| |||||||||||| || | ||||||||| | ||||| || || ||||| Sbjct 224152 CGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCCGT 224211 Query 225690 CAAAGTTTTTATGAACACTTGCATTTTA 225717 | || || | ||| | |||||||||| Sbjct 224212 AAGGGTCTTCACGAAGATTTGCATTTTA 224239 >seq4665 Length=34750 Score = 122 bits (134), Expect = 2e-22 Identities = 111/139 (80%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 |||||| || ||||||| ||||| |||||| ||| ||||||||||||| ||||||||| Sbjct 792 TATTTCAAGCTCTGGTAAGGTTCTTCGCGTTACATCGAATTAAACCACATGCTCCACCGC 851 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | | |||||| || |||| ||||| | |||||| |||| |||||||| || Sbjct 852 TTGTGCGAGCCCCCGTCAATTCCTTTAAGTTTCACTCTTGCGAGCGTACTACTCAGGCGG 911 Query 7844 AATA-TTTACGCGTTAGCT 7861 ||| || ||||||||||| Sbjct 912 GATACTTAACGCGTTAGCT 930 Score = 122 bits (134), Expect = 2e-22 Identities = 111/139 (80%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 |||||| || ||||||| ||||| |||||| ||| ||||||||||||| ||||||||| Sbjct 33930 TATTTCAAGCTCTGGTAAGGTTCTTCGCGTTACATCGAATTAAACCACATGCTCCACCGC 33871 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | | |||||| || |||| ||||| | |||||| |||| |||||||| || Sbjct 33870 TTGTGCGAGCCCCCGTCAATTCCTTTAAGTTTCACTCTTGCGAGCGTACTACTCAGGCGG 33811 Query 7844 AATA-TTTACGCGTTAGCT 7861 ||| || ||||||||||| Sbjct 33810 GATACTTAACGCGTTAGCT 33792 >seq3816 Length=5097 Score = 122 bits (134), Expect = 2e-22 Identities = 111/139 (80%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 |||||| || ||||||| ||||| |||||| ||| ||||||||||||| ||||||||| Sbjct 4567 TATTTCAAGCTCTGGTAAGGTTCTTCGCGTTACATCGAATTAAACCACATGCTCCACCGC 4508 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | | |||||| || |||| ||||| | |||||| |||| |||||||| || Sbjct 4507 TTGTGCGAGCCCCCGTCAATTCCTTTAAGTTTCACTCTTGCGAGCGTACTACTCAGGCGG 4448 Query 7844 AATA-TTTACGCGTTAGCT 7861 ||| || ||||||||||| Sbjct 4447 GATACTTAACGCGTTAGCT 4429 >seq1834 Length=313589 Score = 122 bits (134), Expect = 2e-22 Identities = 111/139 (80%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 |||||| || ||||||| ||||| |||||| ||| ||||||||||||| ||||||||| Sbjct 116014 TATTTCAAGCTCTGGTAAGGTTCTTCGCGTTACATCGAATTAAACCACATGCTCCACCGC 115955 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | | |||||| || |||| ||||| | |||||| |||| |||||||| || Sbjct 115954 TTGTGCGAGCCCCCGTCAATTCCTTTAAGTTTCACTCTTGCGAGCGTACTACTCAGGCGG 115895 Query 7844 AATA-TTTACGCGTTAGCT 7861 ||| || ||||||||||| Sbjct 115894 GATACTTAACGCGTTAGCT 115876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192459922037510