Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq18 129 1e-24 seq1943 120 7e-22 >seq18 Length=557087 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || |||||||| || ||||||||||| | | || || ||||| || | Sbjct 280011 CAAG-TGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCA 280069 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || |||||||||||||| | |||||| || | | || || ||||| || |||| Sbjct 280070 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 280129 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || ||| |||| | | ||||||| ||| || || ||||| || || || | Sbjct 280130 TCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGTCTTCC 280189 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| || ||||| |||| |||||| Sbjct 280190 CCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || |||||||| || ||||||||||| | | || || ||||| || | Sbjct 280239 CAAG-TGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCA 280297 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || |||||||||||||| | |||||| || | | || || ||||| || |||| Sbjct 280298 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 280357 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || ||| |||| | | ||||||| ||| || || ||||| || || || | Sbjct 280358 TCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACATCGAGAGTGATGGTCTTCC 280417 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| || ||||| |||| |||||| Sbjct 280418 CCGTGAGGGTTTTCACAAAGATCTGCAT 280445 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || |||||||| || ||||||||||| | | || || ||||| || | Sbjct 280467 CAAG-TGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGACAGCGTCCTTCCATCCTCCA 280525 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || |||||||||||||| | |||||| || | | || || ||||| || |||| Sbjct 280526 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGAA 280585 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || ||| | || | | | ||||| ||| || || ||||| || || || | Sbjct 280586 TCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCACATCGAGAGTGATGGTCTTCC 280645 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 | || ||||||||||| |||| ||||||| || Sbjct 280646 CTGTAAGAGTCTTCACAAAGATCTGCATTGTA 280677 >seq1943 Length=707543 Score = 120 bits (132), Expect = 7e-22 Identities = 146/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGA 151971 || || || ||||||||||| | | ||| || || || || || ||||| || |||| Sbjct 224045 TCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATCAAGTTGCTTT--CCTGCGA 224102 Query 151972 AGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAG 152031 ||||||| | |||||| || | || ||| || ||||| ||||| ||||| || ||| Sbjct 224103 AGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTCACAT 224162 Query 152032 TCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCA 152091 | || | | |||| ||| || || || ||||| || ||||| ||||| || ||||||| Sbjct 224163 TTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTTTCCCGTAAGGGTCTTCA 224222 Query 152092 CGAAGACCTGCATTTTA 152108 |||||| ||||||||| Sbjct 224223 CGAAGATTTGCATTTTA 224239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153751835770215