Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1943 154 3e-32 seq18 154 3e-32 seq1928 100 6e-16 >seq1943 Length=707543 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||||| || | |||||||| || || |||||||| || | ||| || | ||| || || Sbjct 224026 TACCAAGTGAAGGGTGCTTTCCTTCTGAATGTTGTAATCCGAAAGAGTCCTGCCGTCATC 224085 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 ||||| || || || ||||| | ||| || || ||| ||| || |||||||||||||| Sbjct 224086 AAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCTTG 224145 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||| || || || || | ||||| ||||| |||| ||| || ||||||||||| || || Sbjct 224146 GATTTTCGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACGTCGAGAGTGATGGTTTT 224205 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| | ||||| ||||| || |||||||| Sbjct 224206 TCCCGTAAGGGTCTTCACGAAGATTTGCATTTT 224238 >seq18 Length=557087 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || |||| || | ||| ||||| || |||||||| |||| Sbjct 280447 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280506 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | |||||||| || || || ||||| ||||| | ||| || || ||| ||| Sbjct 280507 AGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGA 280566 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || |||||||| || || | ||||| || || || | || || Sbjct 280567 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTTTCGATGGTATCTGATGGCTCCACA 280626 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||||||||| ||||| || || | |||||| || || ||||||||| Sbjct 280627 TCGAGAGTGATGGTCTTCCCTGTAAGAGTCTTCACAAAGATCTGCATT 280674 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || |||| || | ||| ||||| || |||||||| |||| Sbjct 279991 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280050 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | |||||||| || || || ||||| ||||| | ||| || || ||| ||| Sbjct 280051 AGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGA 280110 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || |||||||| || || | || || ||||| || | || || Sbjct 280111 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACA 280170 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| ||||| | || || || || |||||||| Sbjct 280171 TCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280217 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || |||| || | ||| ||||| || |||||||| |||| Sbjct 280219 CCACCTCTCAGGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAC 280278 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | |||||||| || || || ||||| ||||| | ||| || || ||| ||| Sbjct 280279 AGCGTCCTTCCATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCAGGAGGA 280338 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || |||||||| || || | || || ||||| || | || || Sbjct 280339 ATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAATGGTGTCTGATGGCTCCACA 280398 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| ||||| | || || || || |||||||| Sbjct 280399 TCGAGAGTGATGGTCTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 280445 >seq1928 Length=265371 Score = 100 bits (110), Expect = 6e-16 Identities = 291/447 (65%), Gaps = 6/447 (1%) Strand=Plus/Plus Query 273585 ATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAA 273644 ||||||||||| ||||| || | || | | | |||||| || || || || || Sbjct 206157 ATAATATCTTTTGGGTTATAGTTGGGGATGAAGGAAGACCACCCTGTTCCGATGCCTTCG 206216 Query 273645 GAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCA 273704 ||||| || || | | | || || | || |||||||| | ||||||||| || | | Sbjct 206217 CTCCCATTGACAAGCACAGTTGGAATGACAGGAACATAATACTTGGGCTCAATCTTTTGA 206276 Query 273705 CCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTC 273764 || || || |||||||||| || || | || || | ||| ||| || || || Sbjct 206277 CCCTCTTCATAAAGGTACTCCAGCAGTGGGTCGTCTGCCTCAGGGAAGACTAGACGAGTG 206336 Query 273765 TGAGGATTCAGTTTCGTGAAAATGTA---CCTGGCACTCGCATGGTCCTTGCCACCTTGC 273821 | || ||||| ||||| ||||| | ||| |||| || || || |||| Sbjct 206337 TACGGCGCGAGTTTGGTGAAGATGTAGCGCGGTGCAGACGCA---TCTTTCCCTCCTTCT 206393 Query 273822 AGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAA 273881 ||||||||| || || || | ||| || | || | ||||||||| || || | Sbjct 206394 TTCCTCGAACCGAATTGTCCAACAGGCTCAAGGAAATTCAGGTTGTTGCTGCCCACAAAC 206453 Query 273882 TCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTG 273941 ||| ||||| | | |||||| || ||||| || |||||||| || || || Sbjct 206454 CGCTGCGCCATGGTTATGATAGTTTGTTGCAGGGACTGTTCTCCGTGGTGGTAAGCACTC 206513 Query 273942 TGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTG 274001 |||||||| | || || ||||| || ||||||| || | || ||| |||| Sbjct 206514 TGTTCGGCTACGTAGCCTGACAACTGGGCGACCTTCAATTCAGCCTTCGTATTTTTCTTG 206573 Query 274002 AATGCGGAATACAACACCTTCCGCTGC 274028 || | | | ||| ||| || |||||| Sbjct 206574 AAAACTGCAAACAGCACTTTGCGCTGC 206600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046676636070910