Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20tenella_20[refseq_20GCF_5F000499545.2_202013-11-06] 4,665 sequences; 51,894,357 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18 163 7e-35 seq1943 145 2e-29 >seq18 Length=557087 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| ||||| || || || ||||| ||||| ||||| |||||| Sbjct 280214 CAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCAGAC 280155 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||||||||||||| || || || ||||| || ||||| Sbjct 280154 ACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAG 280095 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| || ||||||||||| || | ||||| ||| | Sbjct 280094 CGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATT 280035 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 280034 CAGAAAGAGTCCACCCTTCA-CTTG 280011 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| ||||| || || || ||||| ||||| ||||| |||||| Sbjct 280442 CAGATCTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTCGATGTGGAGCCATCAGAC 280383 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||||||||||||| || || || ||||| || ||||| Sbjct 280382 ACCATTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAG 280323 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| || ||||||||||| || | ||||| ||| | Sbjct 280322 CGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATT 280263 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 280262 CAGAAAGAGTCCACCCTTCA-CTTG 280239 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| ||||| || || ||||| ||||| ||||| ||||| Sbjct 280670 CAGATCTTTGTGAAGACTCTTACAGGGAAGACCATCACTCTCGATGTGGAGCCATCAGAT 280611 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||||||||||||| || || || ||||| || ||||| Sbjct 280610 ACCATCGAAAATGTGAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCTGATCAGCAG 280551 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| || ||||||||||| || | ||||| ||| | Sbjct 280550 CGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGAAGGACGCTGTCTGATTACAACATT 280491 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 280490 CAGAAAGAGTCCACCCTTCA-CTTG 280467 >seq1943 Length=707543 Score = 145 bits (160), Expect = 2e-29 Identities = 152/199 (76%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA 177973 |||||||| |||| |||||||| || || || |||||||| ||||| ||||| ||||| Sbjct 224239 TAAAATGC---AAATCTTCGTGAAGACCCTTACGGGAAAAACCATCACTCTCGACGTGGA 224183 Query 177974 AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 | || ||||||||||| || || || || || || ||||| || || ||||| || Sbjct 224182 ACCTTCCGACACCATCGAAAATGTGAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCC 224123 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 || ||||| || ||||||||||| ||||| || || || || || ||||||||| | || Sbjct 224122 TGATCAGCAGCGTCTTATCTTCGCAGGAAAGCAACTTGATGACGGCAGGACTCTTTCGGA 224063 Query 178094 TTATAACGTCCAAAAAGAA 178112 ||| ||| | || || ||| Sbjct 224062 TTACAACATTCAGAAGGAA 224044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203659252610010