Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq17428 114 1e-20 seq22541 111 1e-19 seq18875 111 1e-19 seq28501 104 2e-17 seq33152 98.7 9e-16 seq21031 95.1 1e-14 seq28493 93.3 4e-14 seq21422 89.7 4e-13 >seq17428 Length=1321 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| ||||| || |||||||| || || ||||| | Sbjct 938 ATGCAAATCTTCGTCAAAACTTTGACCGGAAAAACCATCACTCTTGATGTTGAACCTTCT 879 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || ||||||||| | || ||||||| Sbjct 878 GATACTATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 819 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || |||||||| || || | |||| | |||||||||||| Sbjct 818 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGACAATAGAACTCTTGCCGATTACAAT 759 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || || |||||||| |||||||| Sbjct 758 ATCCAAAAGGAATCAACTCTTCA 736 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||||||||| | |||||| | || || |||||||| || ||| ||||| Sbjct 1170 AAAAATGCAAATATTTGTTAAAACACTCACAGGAAAAACCATCACTCTCGATGTAGAACC 1111 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | || | || ||| || || ||||||||| | || ||| Sbjct 1110 TTCTGACACCATTGAAAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCAGA 1051 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||||||| | ||||| || || |||||| | || || || |||| | || ||||| Sbjct 1050 TCAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAACAGAACTCTTGCTGATTA 991 Query 29138 CAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| || || |||||||| ||||||||| Sbjct 990 CAACATCCAAAAGGAATCAACTCTTCAC 963 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| ||||| || |||||||| || ||| ||||| | Sbjct 710 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCT 651 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| || ||||||||| | || ||||||| Sbjct 650 GACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 591 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || |||||| | || || | ||| | || ||||||||| Sbjct 590 CAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAATAGAACACTCGCTGATTACAAT 531 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || || ||||| ||||||||| |||| Sbjct 530 ATCCAAAAAGAATCAACTCTTCACTTGGT 502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| ||||| || |||||||| || || ||||| | Sbjct 482 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTTGACGTTGAACCTTCT 423 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | || || || || ||||||||| | || ||||||| Sbjct 422 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 363 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || |||||| | ||||| || |||| | || || ||||| Sbjct 362 CAAAGATTAATCTTCGCAGGAAAACAATTAGAAGACAACAGAACTCTCGCTGACTACAAC 303 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||| ||||||||| |||| || || | |||| || Sbjct 302 ATCCAAAAAGAATCAACTCTTCACTTGGTCCTAAGACTTAGAGGTGG 256 >seq22541 Length=1059 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| ||||| || |||||||| || ||| ||||| | Sbjct 671 ATGCAAATCTTCGTCAAAACTTTGACCGGAAAAACCATCACTCTCGATGTTGAACCTTCT 612 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || || || ||||||||| | || ||||||| Sbjct 611 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 552 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || |||||||| || ||| | |||| | |||||||||||| Sbjct 551 CAAAGATTAATCTTCGCAGGAAAACAACTTGAGGATAATAGAACTCTTGCCGATTACAAT 492 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || || || ||||| ||||||||| Sbjct 491 ATCCAAAAAGAATCAACTCTTCAC 468 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| ||||| || |||||||| ||| || ||||| | Sbjct 443 ATGCAAATCTTTGTCAAAACTTTGACCGGAAAAACCATCACCCTTGATGTTGAACCTTCT 384 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || || || ||||||||| | || ||||||| Sbjct 383 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 324 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || |||||| | ||||| || |||| | || |||||||| Sbjct 323 CAAAGATTAATCTTCGCAGGAAAACAATTAGAAGACAACAGAACTCTCGCTGATTACAAC 264 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || || |||||||| ||||||||| Sbjct 263 ATCCAAAAGGAATCAACTCTTCAC 240 >seq18875 Length=1247 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| ||||| || |||||||| || ||| ||||| | Sbjct 397 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCT 456 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| || ||||||||| | || ||||||| Sbjct 457 GACACCATCGAAAATGTCAAAGCCAAAATACAAGACAAAGAAGGTATTCCTCCAGATCAA 516 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || |||||||| || || | |||| | |||||||||||| Sbjct 517 CAAAGATTAATCTTCGCCGGAAAACAACTTGAGGACAATAGAACTCTTGCCGATTACAAT 576 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || || || ||||| ||||||||| Sbjct 577 ATCCAAAAAGAATCAACTCTTCAC 600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 |||||||||||||||| ||||||| | || || || ||||| || || ||||| Sbjct 165 AAAAATGCAAATATTCGTCAAAACTCTTACTGGAAAGACCATCACTCTTGATGTAGAACC 224 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | | | || || || || ||||||||| | || ||| Sbjct 225 TTCTGACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGA 284 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||||||| | ||||| || || |||||| | || || || ||| | || ||||| Sbjct 285 TCAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAACAGAACACTCGCTGATTA 344 Query 29138 CAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| || || |||||||| ||||||||| Sbjct 345 CAACATCCAAAAGGAATCAACTCTTCAC 372 >seq28501 Length=727 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||||||||| | ||||| | || || ||||| || || || | || || Sbjct 635 AAAAATGCAAATATTTGTAAAAACTATAACCGGAAAAACGATAACTCTTGATATAGAGCC 576 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 || || | | || |||| ||||||| |||||||||||| | || ||| Sbjct 575 AAGCGATACAATAGAAGAAATTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGA 516 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||||||| | || ||||| || |||||| | ||||| | |||||| | | |||| Sbjct 515 TCAACAAAGAATGATTTTTGCTGGAAAACAAGTTGAAGACTATAAAACTTTAGTATATTA 456 Query 29138 CAATATTCAGAAGGAATCTACTCTTCA 29164 ||||| || || |||||||||||||| Sbjct 455 TAATATACAAAAAGAATCTACTCTTCA 429 >seq33152 Length=3236 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || ||||| || ||| || ||||| | Sbjct 2678 ATGCAAATCTTCGTCAAAACTCTCACCGGTAAAACTATCACCTTAGATGTTGAACCTTCT 2737 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | |||| ||||| || ||||||||| | || ||||||| Sbjct 2738 GACACCATCGAAAACGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 2797 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | ||||| || || |||||| | || || || |||| | ||||||||||| Sbjct 2798 CAAAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACTCTTGCCGATTACAAC 2857 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || || |||||||| ||||||||| Sbjct 2858 ATCCAAAAGGAATCAACTCTTCAC 2881 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || ||||| || ||| || ||||| | Sbjct 2906 ATGCAAATCTTCGTCAAAACCCTTACTGGTAAAACTATCACCTTAGATGTTGAACCTTCT 2965 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| |||||| || ||||||||| | || ||||||| Sbjct 2966 GATACCATTGAAAACGTTAAGGCAAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 3025 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | ||||| || || |||||| | || || || ||| | ||||||||||| Sbjct 3026 CAGAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACCTTAGCCGATTACAAC 3085 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || || |||||||| |||||||| Sbjct 3086 ATCCAAAAGGAATCAACTCTTCA 3108 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||| ||||||||||| ||||||| | || || ||||| || || || ||||| Sbjct 2446 AAACATGCAAATATTTGTCAAAACCCTCACTGGTAAAACTATCACTTTAGATGTTGAACC 2505 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | || | || ||||| || ||||||||| | || ||| Sbjct 2506 TTCTGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCTCCAGA 2565 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||||||| | ||||| || || |||||| | || || || ||| | |||||||| Sbjct 2566 TCAACAAAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACCTTAGCCGATTA 2625 Query 29138 CAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| || || |||||||| ||||||||| Sbjct 2626 CAACATCCAAAAGGAATCAACTCTTCAC 2653 >seq21031 Length=1135 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 29080 AACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139 ||||||||||||| ||||| || |||||| |||||||| | |||| | || ||||| | Sbjct 198 AACAAAGACTTATTTTTGCAGGAAAACAATTGGAAGATAACGGAACTTTTGCTGATTATA 139 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 29191 ||||||| || ||||| ||| | || | |||||| | ||| ||||||| || Sbjct 138 ATATTCAAAAAGAATCGACTTTGCATTTAGTGTTAAGGTTAAGAGGAGGTTA 87 >seq28493 Length=728 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104 ||||||| || |||||| | | || ||||||||||||||||||| ||||| || || Sbjct 471 AAAAATTCAAGAAAAAGAAAGAATTCCTATAGATCAACAAAGACTTATTTTTGCTGGTAA 530 Query 29105 ACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 | || |||||||| | |||| | || ||||| ||||| || || ||||| ||| |||| Sbjct 531 AGAAATGGAAGATCATAGAACTTTAGCTGATTATAATATCCAAAAAGAATCAACTGTTCA 590 Query 29165 CATGGTGTTACGATTACGAGGAGG 29188 | | | ||||| ||||||| Sbjct 591 TTTAATTCTTAGATTAAGAGGAGG 614 >seq21422 Length=9460 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104 ||||||| ||||||||||| | || | ||||||||||||||||| |||| || || Sbjct 399 AAAAATTCAAGATAAAGAAGGAATTCCTATTGATCAACAAAGACTTATTCTTGCTGGTAA 458 Query 29105 ACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 | || |||||||| | |||| | || ||||| ||||| || || |||| | | |||| Sbjct 459 AGAAATGGAAGATAATAGAACTTTAGCTGATTATAATATCCAAAAAGAATTAAATATTCA 518 Query 29165 CATGGTGTTACGATTACGAGGAGG 29188 | | | |||||| ||||||| Sbjct 519 TTTAATTCTTCGATTAAGAGGAGG 542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428140054350425