Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq17428 105 7e-18 seq33152 102 8e-17 seq18875 100 3e-16 >seq17428 Length=1321 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||||||||| || ||||| ||||| || ||||||||||| |||| || ||| | Sbjct 1170 AAAAATGCAAATATTTGTTAAAACACTCACAGGAAAAACCATCACTCTCGATGTAGAACC 1111 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | ||| |||| | ||| || | |||||||| || || || | || Sbjct 1110 TTCTGACACCATTGAAAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCAGA 1051 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||| || | |||| ||| || ||||| | || ||| | | || || || || Sbjct 1050 TCAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAACAGAACTCTTGCTGATTA 991 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||||| | || || || |||| Sbjct 990 CAACATCCAAAAGGAATCAACTCTTCACTTAGT 958 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||||||||| | ||||| ||| | | Sbjct 482 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTTGACGTTGAACCTTCT 423 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||| | || || | |||||||| || || || | || || Sbjct 422 GACACCATTGAAAACG-TCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCA 364 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || ||||| | || ||| | | || ||| |||||||| Sbjct 363 ACAAAGATTAATCTTCGCAGGAAAACAATTAGAAGACAACAGAACTCTCGCTGACTACAA 304 Query 40869 CATCCAGAAGGA 40880 |||||| || || Sbjct 303 CATCCAAAAAGA 292 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||||||||| | || || ||| | | Sbjct 938 ATGCAAATCTTCGTCAAAACTTTGACCGGAAAAACCATCACTCTTGATGTTGAACCTTCT 879 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||| | ||||||| |||||||| || || || | || || Sbjct 878 GATACTATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 819 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| || ||||| || || ||| | | || || ||| ||||| Sbjct 818 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGACAATAGAACTCTTGCCGATTACAAT 759 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| | || || ||| |||| Sbjct 758 ATCCAAAAGGAATCAACTCTTCATTTAGT 730 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||||||||| |||| || ||| | | Sbjct 710 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCT 651 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | ||||| | |||||||| || || || | || || Sbjct 650 GACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 591 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| || ||||| | || ||| | | || ||| || ||||| Sbjct 590 CAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAATAGAACACTCGCTGATTACAAT 531 Query 40870 ATCCAGAAGGA 40880 ||||| || || Sbjct 530 ATCCAAAAAGA 520 >seq33152 Length=3236 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || ||||| |||||| | || || ||| | | Sbjct 2678 ATGCAAATCTTCGTCAAAACTCTCACCGGTAAAACTATCACCTTAGATGTTGAACCTTCT 2737 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | ||| |||| | | |||||||| || ||||| | || || Sbjct 2738 GACACCATCGAAAACGTTAAAGCCAAAA-TCCAAGACAAAGAAGGTATCCCACCAGATCA 2796 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || ||||| | || ||| | | || || ||| ||||| Sbjct 2797 ACAAAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACTCTTGCCGATTACAA 2856 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| ||||| | || || || |||| Sbjct 2857 CATCCAAAAGGAATCAACTCTTCACTTAGT 2886 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || ||||| |||||| | || || ||| | | Sbjct 2906 ATGCAAATCTTCGTCAAAACCCTTACTGGTAAAACTATCACCTTAGATGTTGAACCTTCT 2965 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| | |||| |||||| | |||||||| || ||||| | || || Sbjct 2966 GATACCATTGAAAACGTT-AAGGCAAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 3024 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| ||| || ||||| | || ||| | | ||| | ||| ||||| Sbjct 3025 ACAGAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACCTTAGCCGATTACAA 3084 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| ||||| | || || ||| |||| Sbjct 3085 CATCCAAAAGGAATCAACTCTTCATTTAGT 3114 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||||||||| || ||||| ||||| || ||||| ||||| | || || ||| | Sbjct 2446 AAACATGCAAATATTTGTCAAAACCCTCACTGGTAAAACTATCACTTTAGATGTTGAACC 2505 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | | |||| | ||||| | |||||||| || || || | || Sbjct 2506 TTCTGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCTCCAGA 2565 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||| || | |||| ||| || ||||| | || ||| | | ||| | ||| || Sbjct 2566 TCAACAAAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACCTTAGCCGATTA 2625 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| ||||| | || || || |||| Sbjct 2626 CAACATCCAAAAGGAATCAACTCTTCACTTAGT 2658 >seq18875 Length=1247 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||||||||| ||||| || || || || |||||||| | || || ||| | Sbjct 165 AAAAATGCAAATATTCGTCAAAACTCTTACTGGAAAGACCATCACTCTTGATGTAGAACC 224 Query 40746 CACCGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | || ||||| |||| | || || | |||||||| || || || | | Sbjct 225 TTCTGACACCATTGAAAACG-TCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAG 283 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | || ||| || | |||| ||| || ||||| | || ||| | | || ||| || | Sbjct 284 ATCAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAACAGAACACTCGCTGATT 343 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||| ||||| | || || || |||| Sbjct 344 ACAACATCCAAAAGGAATCAACTCTTCACTTAGT 377 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||||||||| |||| || ||| | | Sbjct 397 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCT 456 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | ||||| | |||||||| || || || | || || Sbjct 457 GACACCATCGAAAATGTCAAAGCCAAAATACAAGACAAAGAAGGTATTCCTCCAGATCAA 516 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| || ||||| || || ||| | | || || ||| ||||| Sbjct 517 CAAAGATTAATCTTCGCCGGAAAACAACTTGAGGACAATAGAACTCTTGCCGATTACAAT 576 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || | || || || |||| Sbjct 577 ATCCAAAAAGAATCAACTCTTCACTTAGT 605 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||||||||| | || || ||| | | Sbjct 853 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTTGATGTTGAACCTTCT 912 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| |||| | || || | |||||||| || || || | || || Sbjct 913 GACACCATTGAAAACG-TCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCA 971 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || ||||| | || ||| | | || ||| |||||||| Sbjct 972 ACAAAGATTAATTTTCGCAGGAAAACAATTAGAGGACAACAGAACTCTCGCTGACTACAA 1031 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| || || | || || || |||| Sbjct 1032 CATCCAAAAAGAATCAACTCTTCACTTAGT 1061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514977465591600