Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq33152 93.3 4e-14 seq17428 86.0 5e-12 seq22541 84.2 2e-11 >seq33152 Length=3236 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | || || || ||||| |||||||||||| | ||| | | ||||| Sbjct 2886 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCAAGAGTTCTGTTGTCCTCT 2827 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| || ||| |||| | | || ||||| || || || || || |||||| Sbjct 2826 AATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 2767 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| |||||| | ||||| |||||| | || || || | ||| | ||||| Sbjct 2766 ATTTTGGCTTTAACGTTTTCGATGGTGTCAGAAGGTTCAACATCTAAGGTGATAGTTTTA 2707 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| |||||||| || || || ||||| Sbjct 2706 CCGGTGAGAGTTTTGACGAAGATTTGCAT 2678 >seq17428 Length=1321 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || ||||| || ||||||||| | ||| | | ||||| || ||||||||| Sbjct 742 GTTGATTCCTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCAAGTTGTTTTCCA 801 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | || ||||| ||||| || || || |||||| |||||| ||| Sbjct 802 GCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTG 861 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | || || | || || || | || | ||||| ||||||| |||| Sbjct 862 ACATTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGTTTTTCCGGTCAAAGTT 921 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 922 TTGACGAAGATTTGCAT 938 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | || || || ||||| ||||||||||| | ||| | | ||||| Sbjct 958 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCAGCAAGAGTTCTGTTGTCCTCT 1017 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||||| ||| |||| | | || ||||| ||||| || || || |||||| Sbjct 1018 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 1077 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| ||| || | ||| | |||||| | || || |||| || | ||||| Sbjct 1078 ATCTTTGCTTTGACATTTTCAATGGTGTCAGAAGGTTCTACATCGAGAGTGATGGTTTTT 1137 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| ||||| || ||||| Sbjct 1138 CCTGTGAGTGTTTTAACAAATATTTGCAT 1166 >seq22541 Length=1059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | || || || ||||| ||||||||||| | ||| | | || || Sbjct 235 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCAGCGAGAGTTCTGTTGTCTTCT 294 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||||| ||| |||| | | || ||||| ||||| || || || |||||| Sbjct 295 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 354 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | ||||| ||||| | || || || | ||| | ||||| Sbjct 355 ATCTTGGCTTTGACATTTTCGATAGTGTCAGAAGGTTCAACATCAAGGGTGATGGTTTTT 414 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| |||||| ||||| || ||||| Sbjct 415 CCGGTCAAAGTTTTGACAAAGATTTGCAT 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433631940894220