Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18875 129 5e-25 seq17428 125 6e-24 seq22541 120 3e-22 seq33152 109 5e-19 >seq18875 Length=1247 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| || ||||| ||||| |||| |||||||| || Sbjct 397 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCT 456 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| | |||| ||||| ||||| | || || || || Sbjct 457 GACACCATCGAAAATGTCAAAGCCAAAATACAAGACAAAGAAGGTATTCCTCCAGATCAA 516 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| ||||| || ||||| | || ||| || ||| | |||||| || Sbjct 517 CAAAGATTAATCTTCGCCGGAAAACAACTTGAGGACAATAGAACTCTTGCCGATTACAAT 576 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| |||||||| | || || ||||| || || |||| Sbjct 577 ATCCAAAAAGAATCAACTCTTCACTTAGTCCTCAGACTTAGAGGTGGTA 625 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| || ||||| ||||| | || |||||||| || Sbjct 625 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTTGATGTTGAACCTTCT 684 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| |||||| | || ||||| ||||| | || || || || Sbjct 685 GATACTATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 744 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| || || || ||||| || || ||| || || | ||||| ||| Sbjct 745 CAAAGATTAATCTTTGCAGGAAAACAATTAGAGGACAATAGAACACTCGCTGATTACAAC 804 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| |||||||| | || || ||||| || || |||| Sbjct 805 ATCCAAAAAGAATCAACTCTTCACTTAGTCCTCAGACTTAGAGGTGGTA 853 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| || ||||| ||||| | || |||||||| || Sbjct 853 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTTGATGTTGAACCTTCT 912 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | || ||||| ||||| | || || || || Sbjct 913 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 972 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| ||||| || ||||| || || ||| | ||| | || || ||| Sbjct 973 CAAAGATTAATTTTCGCAGGAAAACAATTAGAGGACAACAGAACTCTCGCTGACTACAAC 1032 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||||||||| |||||||| | || || ||||| || || || Sbjct 1033 ATCCAAAAAGAATCAACTCTTCACTTAGTCCTCAGACTTAGAGGTGG 1079 >seq17428 Length=1321 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||| |||| || ||||| ||||| |||| |||||||| || Sbjct 710 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCT 651 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | ||| ||||| ||||| | || || || || Sbjct 650 GACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 591 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| ||||| || ||||| || || ||| || || | ||||| || Sbjct 590 CAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAATAGAACACTCGCTGATTACAAT 531 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| |||||||| |||| || ||||| || || |||| Sbjct 530 ATCCAAAAAGAATCAACTCTTCACTTGGTCCTCAGACTTAGAGGTGGTA 482 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| || ||||| ||||| | ||||||||||| || Sbjct 482 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTTGACGTTGAACCTTCT 423 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | || ||||| ||||| | || || || || Sbjct 422 GACACCATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 363 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| ||||| || ||||| || |||||| | ||| | || || ||| Sbjct 362 CAAAGATTAATCTTCGCAGGAAAACAATTAGAAGACAACAGAACTCTCGCTGACTACAAC 303 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||||||||| |||||||| |||| || ||||| || || || Sbjct 302 ATCCAAAAAGAATCAACTCTTCACTTGGTCCTAAGACTTAGAGGTGG 256 >seq22541 Length=1059 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| || ||||| ||||| |||| |||||||| || Sbjct 671 ATGCAAATCTTCGTCAAAACTTTGACCGGAAAAACCATCACTCTCGATGTTGAACCTTCT 612 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| |||||| | || ||||| ||||| | || || || || Sbjct 611 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 552 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| ||||| || ||||| | || || || ||| | |||||| || Sbjct 551 CAAAGATTAATCTTCGCAGGAAAACAACTTGAGGATAATAGAACTCTTGCCGATTACAAT 492 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| |||||||| | || || ||||| || || |||| Sbjct 491 ATCCAAAAAGAATCAACTCTTCACTTAGTCCTCAGACTTAGAGGTGGTA 443 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||| || || || ||||| || || || || || || |||| |||||||| Sbjct 903 AAAAATGCAAATATTTGTTAAAACTCTTACTGGAAAGACAATTACACTCGATGTTGAACC 844 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | |||| |||||| | || ||||| ||||| | || || || Sbjct 843 TTCTGACACCATTGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGA 784 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || | |||| ||||| || ||||| || || ||| || || | ||||| Sbjct 783 TCAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAATAGAACACTCGCTGATTA 724 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||||||||| |||||||| | || || ||||| || || |||| Sbjct 723 CAATATCCAAAAAGAATCAACTCTTCACTTAGTCCTCAGACTTAGAGGTGGTA 671 >seq33152 Length=3236 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 |||||||||||| || || || || || || || ||||| ||||| | || |||||||| Sbjct 2446 AAACATGCAAATATTTGTCAAAACCCTCACTGGTAAAACTATCACTTTAGATGTTGAACC 2505 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | |||||| | ||| ||||| ||||| | || || || Sbjct 2506 TTCTGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCTCCAGA 2565 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || | |||| ||||| || ||||| || || ||| | || | |||||| Sbjct 2566 TCAACAAAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACCTTAGCCGATTA 2625 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| ||||| |||||||| | || || ||||| || || |||| Sbjct 2626 CAACATCCAAAAGGAATCAACTCTTCACTTAGTCCTCAGACTTAGAGGTGGTA 2678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445557251977200