Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq28501 109 5e-19 seq22541 100 3e-16 seq18875 100 3e-16 seq17428 98.7 1e-15 seq33152 95.1 1e-14 >seq28501 Length=727 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||||| |||||||| || ||||||| | || | ||||||| | ||| Sbjct 429 TGAAGAGTAGATTCTTTTTGTATATTATAATATACTAAAGTTTTATAGTCTTCAACTTGT 488 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | |||| | ||| ||||| ||||| || |||||||| || ||| |||| Sbjct 489 TTTCCAGCAAAAATCATTCTTTGTTGATCTGGAGGAATACCTTCTTTATCT-TGAATTTT 547 Query 139682 TGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || |||| | ||| | ||| ||| | ||||| | |||| || | ||| || ||||| Sbjct 548 TGCTTTAATTTCTTCTATTGTATCGCTTGGCTCTATATCAAGAGTTATCGTTTTTCCGGT 607 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | |||||||| ||||||||||| Sbjct 608 TATAGTTTTTACAAATATTTGCAT 631 >seq22541 Length=1059 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| || || || ||||| ||||| ||||| | || || |||||| Sbjct 235 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCAGCGAGAGTTCTGTTGTCTTCT 294 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| || || |||| | | ||| ||||| ||||| || ||||||||||| | Sbjct 295 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 354 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | ||| | ||||| | || || || |||| ||| | || || Sbjct 355 ATCTTGGCTTTGACATTTTCGATAGTGTCAGAAGGTTCAACATCAAGGGTGATGGTTTTT 414 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| ||||| || || ||||||||| Sbjct 415 CCGGTCAAAGTTTTGACAAAGATTTGCATA 444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| || || |||||||| || || |||||| | || || || || Sbjct 463 ACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTATCCTCA 522 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || ||||| || || |||| | | ||| ||||| ||||| || ||||||||||| | Sbjct 523 AGTTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 582 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | ||| | ||||| | || || || || | || | || || Sbjct 583 ATCTTGGCTTTGACATTTTCGATAGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTT 642 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| ||||| ||||| ||||||||| Sbjct 643 CCGGTCAAAGTTTTGACGAAGATTTGCATA 672 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| || || |||||||| || || ||||| | ||| || ||| || Sbjct 691 ACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCAGCGAGTGTTCTATTGTCCTCT 750 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| || || |||| | | ||| ||||| ||||| || ||||||||||| | Sbjct 751 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 810 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | ||| | ||||| | || || || || | || | ||||| Sbjct 811 ATCTTGGCTTTGACATTTTCAATGGTGTCAGAAGGTTCAACATCGAGTGTAATTGTCTTT 870 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| || ||||||||||| Sbjct 871 CCAGTAAGAGTTTTAACAAATATTTGCAT 899 >seq18875 Length=1247 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| || || |||||||| ||||| ||||| | ||| || ||| || Sbjct 833 ACTAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGCGAGTGTTCTATTGTCCTCT 774 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| || ||| |||| | | ||| ||||| ||||| || ||||||||||| | Sbjct 773 AATTGTTTTCCTGCAAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 714 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | ||| | || || | || || || |||| || | || || Sbjct 713 ATCTTGGCTTTGACGTTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGTTTTT 654 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| ||||| ||||||||| Sbjct 653 CCAGTCAAAGTTTTGACGAAGATTTGCATA 624 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| || || |||||||| || || |||||| | || || ||| || Sbjct 605 ACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCA 546 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || ||||| || || |||| | | ||| ||||| ||||| || ||||||||||| Sbjct 545 AGTTGTTTTCCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGT 486 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| ||| | | ||| | ||||| | || || || || | || | || || Sbjct 485 ATTTTGGCTTTGACATTTTCGATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTT 426 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| ||||| ||||||||| Sbjct 425 CCAGTCAAAGTTTTGACGAAGATTTGCATA 396 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| || || || ||||| ||||| ||||| | ||| || ||| || Sbjct 377 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCAGCGAGTGTTCTGTTGTCCTCT 318 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| || || |||| | | ||| ||||| ||||| || ||||||||||| | Sbjct 317 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 258 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | ||| | ||||| | || || || |||| || | ||||| Sbjct 257 ATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCTACATCAAGAGTGATGGTCTTT 198 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| |||||||||||||| Sbjct 197 CCAGTAAGAGTTTTGACGAATATTTGCAT 169 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| || || |||||||| ||||| || || | || || ||| || Sbjct 1061 ACTAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTTGTCCTCT 1002 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| || || | || | | ||| ||||| ||||| || ||||||||||| | Sbjct 1001 AATTGTTTTCCTGCGAAAATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 942 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | ||| | ||||| | || || || |||| || | || || Sbjct 941 ATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCAACATCAAGAGTGATGGTTTTT 882 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| ||||| ||||||||| Sbjct 881 CCAGTCAAAGTTTTGACGAAGATTTGCATA 852 >seq17428 Length=1321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| |||| || || || ||||| || || |||||| | || || ||| || Sbjct 730 ACTAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCA 789 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || ||||| ||||| |||| | | ||| ||||| ||||| || ||||||||||| || Sbjct 790 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTC-TTG 848 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| | ||| | | ||| | || || | || || || |||| || | || || Sbjct 849 AATTTTGGCTTTGACATTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGTTTT 908 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| ||||| ||||| ||||||||| Sbjct 909 TCCGGTCAAAGTTTTGACGAAGATTTGCATA 939 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || || |||||||| ||||| || || | || || |||||| Sbjct 274 ACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTTGTCTTCT 333 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| || || |||| | | ||| ||||| ||||| || ||||||||||| | Sbjct 334 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 393 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | ||| | ||||| | || || || |||| || | || || Sbjct 394 ATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCAACGTCAAGAGTGATGGTTTTT 453 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| ||||| ||||||||| Sbjct 454 CCAGTCAAAGTTTTGACGAAGATTTGCATA 483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || || |||||||| || || ||||| | ||| || ||| || Sbjct 502 ACCAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCAGCGAGTGTTCTATTGTCCTCT 561 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| || || |||| | | ||| ||||| ||||| || ||||||||||| | Sbjct 562 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 621 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| ||| | | ||| | ||||| | || || || || | || | || || Sbjct 622 ATTTTGGCTTTGACATTTTCAATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTT 681 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| ||||| ||||||||| Sbjct 682 CCAGTCAAAGTTTTGACGAAAATTTGCATA 711 >seq33152 Length=3236 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| || || || ||||| ||||| |||||| | || || ||| || Sbjct 2886 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCAAGAGTTCTGTTGTCCTCT 2827 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||||| || |||| | | ||| ||||| || || || ||||||||||| | Sbjct 2826 AATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 2767 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| ||| | | ||| | ||||| | || || || || | ||| | || || Sbjct 2766 ATTTTGGCTTTAACGTTTTCGATGGTGTCAGAAGGTTCAACATCTAAGGTGATAGTTTTA 2707 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||||| ||||| ||||||||| Sbjct 2706 CCGGTGAGAGTTTTGACGAAGATTTGCATA 2677 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| || || || ||||| ||||| |||||| | || || ||| || Sbjct 2658 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTTGTCCTCT 2599 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||||| || |||| | | ||| ||||| ||||| || ||||||||||| | Sbjct 2598 AATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 2539 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| ||| | | || | ||||| | || || || || | || | || || Sbjct 2538 ATTTTGGCTTTGACATTCTCGATGGTGTCAGAAGGTTCAACATCTAAAGTGATAGTTTTA 2479 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| || ||||||||||| Sbjct 2478 CCAGTGAGGGTTTTGACAAATATTTGCAT 2450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495831252972000