Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq22541 98.7 8e-16 seq18875 95.1 9e-15 seq17428 95.1 9e-15 seq28501 89.7 4e-13 seq21422 89.7 4e-13 >seq22541 Length=1059 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||||||||| | | ||| | | ||| || |||||||| || || || Sbjct 709 TCTTTTTGGATATTGTAATCAGCGAGTGTTCTATTGTCCTCTAATTGTTTTCCTGCGAAG 768 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || |||| |||||||| | || | ||||||||| || |||| ||||||| | Sbjct 769 ATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTT 828 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||| || || || || | || || || ||||| || |||||||| ||| Sbjct 829 TCAATGGTGTCAGAAGGTTCAACATCGAGTGTAATTGTCTTTCCAGTAAGAGTTTTAACA 888 Query 43099 AAAATTTGCATTTTCTT 43115 || ||||||||||| || Sbjct 889 AATATTTGCATTTTTTT 905 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||||| | | || | | ||| || |||||||| || || || Sbjct 253 TCCTTTTGGATGTTGTAATCAGCGAGAGTTCTGTTGTCTTCTAATTGTTTTCCTGCGAAG 312 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || |||| |||||||| | || | ||||||||| || |||| ||||||| | Sbjct 313 ATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTT 372 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| || || || || | || || ||||||||||| | |||||| ||| Sbjct 373 TCGATAGTGTCAGAAGGTTCAACATCAAGGGTGATGGTTTTTCCGGTCAAAGTTTTGACA 432 Query 43099 AAAATTTGCAT 43109 || |||||||| Sbjct 433 AAGATTTGCAT 443 >seq18875 Length=1247 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||||| | | ||| | | ||| || |||||||| || || || Sbjct 359 TCCTTTTGGATGTTGTAATCAGCGAGTGTTCTGTTGTCCTCTAATTGTTTTCCTGCGAAG 300 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || |||| |||||||| | || | ||||||||| || |||| ||||||| | Sbjct 299 ATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTTT 240 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||| || || || || | || || || ||||| || |||||||| || Sbjct 239 TCAATGGTGTCAGAAGGTTCTACATCAAGAGTGATGGTCTTTCCAGTAAGAGTTTTGACG 180 Query 43099 AAAATTTGCATTTTCTT 43115 || ||||||||||| || Sbjct 179 AATATTTGCATTTTTTT 163 >seq17428 Length=1321 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||||| | | || | | ||| || |||||||| || || || Sbjct 976 TCCTTTTGGATGTTGTAATCAGCAAGAGTTCTGTTGTCCTCTAATTGTTTTCCTGCGAAG 1035 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || |||| |||||||| | || | ||||||||| || |||| ||||||| | Sbjct 1036 ATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTT 1095 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||| || || || || | || || |||||||| || || ||||| ||| Sbjct 1096 TCAATGGTGTCAGAAGGTTCTACATCGAGAGTGATGGTTTTTCCTGTGAGTGTTTTAACA 1155 Query 43099 AAAATTTGCATTTTCTT 43115 || ||||||||||| || Sbjct 1156 AATATTTGCATTTTTTT 1172 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | ||||| || | ||| || ||||| | ||||||||| | | ||| | Sbjct 493 AGTCTGAGGACCAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCAGCGAGTGTTCTA 552 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | ||| || |||||||| || || || || |||| |||||||| | || | ||||||| Sbjct 553 TTGTCCTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCT 612 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || ||| ||||||| | ||| ||||| || || || || | || Sbjct 613 TTGTCTTGGATTTTGGCTTTGACATTTTCAATGGTGTCAGAAGGTTCAACATCGAGAGTG 672 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||||||| || | |||||| || ||||||||||| Sbjct 673 ATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 710 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | || ||||| | ||| |||||||| | ||||||||||| | || | Sbjct 721 AGTCTGAGGACTAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCGGCAAGAGTTCTA 780 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | ||| || | |||||| || || || || |||| |||||||| | || | ||||||| Sbjct 781 TTGTCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCT 840 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || || ||||||| | ||| || || || || || || | || Sbjct 841 TTGTCTTGAATTTTGGCTTTGACATTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTG 900 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||||||||| | |||||| || || |||||||| Sbjct 901 ATGGTTTTTCCGGTCAAAGTTTTGACGAAGATTTGCAT 938 >seq28501 Length=727 Score = 89.7 bits (98), Expect = 4e-13 Identities = 125/175 (71%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 ||| || | |||||| || |||||||||| || |||||||| | || | ||||||||| Sbjct 476 GTCTTCAACTTGTTTTCCAGCAAAAATCATTCTTTGTTGATCTGGAGGAATACCTTCTTT 535 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || || |||| | | | | ||| |||| | ||| | || | ||||| Sbjct 536 ATCTTGAATTTTTGCTTTAATTTCTTCTATTGTATCGCTTGGCTCTATATCAAGAGTTAT 595 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCT---TAATTTTATTT 43125 ||||||||||||| |||||| ||||| ||||||||||| | |||||||| || Sbjct 596 CGTTTTTCCGGTTATAGTTTTTACAAATATTTGCATTTTTTATATAATTTTAATT 650 >seq21422 Length=9460 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAG-TGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||| | |||||||| | |||||||| | | || |||||||| | ||| ||||||| Sbjct 314 CCTCCTCTGAGTCTTAATATCAAATGGAGATATACT-TCCTTTTGAATATTATAATCGGT 256 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||||| | || || | ||||||| | || |||||| | || |||||||| | || Sbjct 255 TAATGTTCTATCATCATTCAATTGTATACCATGAAAAATAAGTCTTTGTTGATCTGGAGG 196 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| || |||| || | | | ||| || | || | Sbjct 195 AATTCCTTCTTTATC-CTGAATCTTAGCTTTCACATTCTCTATTGTATCAGATGGTTCAA 137 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | |||| || ||| ||| || |||| || || ||||||||||||||||| Sbjct 136 CATCTAAAGTAATATATTTACCAGTTAATGTCTTAACAAAAATTTGCATTTT 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381195139497030