Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq17428 127 2e-24 seq28501 116 4e-21 seq18875 113 5e-20 seq22541 109 6e-19 seq33152 100 3e-16 >seq17428 Length=1321 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||||| || ||||| ||||| || ||||||||| | || || ||| || Sbjct 730 ACTAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCA 789 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 |||||||| ||||| |||| | | ||| ||||| ||||| || ||||||||||| | Sbjct 790 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGA 849 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||| | | ||| | || || | ||||| || |||| ||| | || || Sbjct 850 ATTTTGGCTTTGACATTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGTTTTT 909 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||| ||||| ||||| ||||||||| Sbjct 910 CCGGTCAAAGTTTTGACGAAGATTTGCATA 939 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || ||||||||||| |||||||| || | || || |||||| Sbjct 274 ACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTTGTCTTCT 333 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| || || |||| | | ||| ||||| ||||| || ||||||||||| Sbjct 334 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 393 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | ||||| | ||||| || |||| ||| | || || Sbjct 394 ATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCAACGTCAAGAGTGATGGTTTTT 453 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| ||||| ||||| ||||||||| Sbjct 454 CCAGTCAAAGTTTTGACGAAGATTTGCATA 483 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || ||||||||||| || |||||||| | ||| || ||| || Sbjct 502 ACCAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCAGCGAGTGTTCTATTGTCCTCT 561 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| || || |||| | | ||| ||||| ||||| || ||||||||||| Sbjct 562 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 621 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||| | | ||| | ||||| | ||||| || || | ||| | || || Sbjct 622 ATTTTGGCTTTGACATTTTCAATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTT 681 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| ||||| ||||| ||||||||| Sbjct 682 CCAGTCAAAGTTTTGACGAAAATTTGCATA 711 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || ||||| ||||| ||||||||||| | || || ||| || Sbjct 958 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCAGCAAGAGTTCTGTTGTCCTCT 1017 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| || || |||| | | ||| ||||| ||||| || ||||||||||| Sbjct 1018 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 1077 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || ||| ||| | | ||| | ||||| | |||||||| || | ||| | || || Sbjct 1078 ATCTTTGCTTTGACATTTTCAATGGTGTCAGAAGGTTCTACATCGAGAGTGATGGTTTTT 1137 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | |||||| || ||||||||||| Sbjct 1138 CCTGTGAGTGTTTTAACAAATATTTGCAT 1166 >seq28501 Length=727 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| ||||||||||||||||| || |||| | || | ||||||| | ||| Sbjct 428 ATGAAGAGTAGATTCTTTTTGTATATTATAATATACTAAAGTTTTATAGTCTTCAACTTG 487 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||| |||||| | |||| | ||| ||||| ||||| || |||||||| || |||||| Sbjct 488 TTTTCCAGCAAAAATCATTCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTT 547 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 | ||| | | ||| | || || | || |||| |||| ||| | ||| || ||||| Sbjct 548 TGCTTTAATTTCTTCTATTGTATCGCTTGGCTCTATATCAAGAGTTATCGTTTTTCCGGT 607 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | |||||||| ||||||||||| Sbjct 608 TATAGTTTTTACAAATATTTGCAT 631 >seq18875 Length=1247 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || ||||||||||| || ||||||||| | || || ||| || Sbjct 605 ACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCA 546 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 |||||||| || || |||| | | ||| ||||| ||||| || ||||||||||| Sbjct 545 AGTTGTTTTCCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGT 486 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||| | | ||| | ||||| | ||||| || || | ||| | || || Sbjct 485 ATTTTGGCTTTGACATTTTCGATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTT 426 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| ||||| ||||| ||||||||| Sbjct 425 CCAGTCAAAGTTTTGACGAAGATTTGCATA 396 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || ||||||||||| ||||||||||| | ||| || ||| || Sbjct 833 ACTAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGCGAGTGTTCTATTGTCCTCT 774 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| || ||| |||| | | ||| ||||| ||||| || ||||||||||| Sbjct 773 AATTGTTTTCCTGCAAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 714 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | || || | ||||| || |||| ||| | || || Sbjct 713 ATCTTGGCTTTGACGTTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGTTTTT 654 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| ||||| ||||| ||||||||| Sbjct 653 CCAGTCAAAGTTTTGACGAAGATTTGCATA 624 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || ||||| ||||| ||||||||||| | ||| || ||| || Sbjct 377 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCAGCGAGTGTTCTGTTGTCCTCT 318 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| || || |||| | | ||| ||||| ||||| || ||||||||||| Sbjct 317 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 258 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | ||||| | |||||||| |||| ||| | ||||| Sbjct 257 ATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCTACATCAAGAGTGATGGTCTTT 198 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||||| |||||||||||||| Sbjct 197 CCAGTAAGAGTTTTGACGAATATTTGCAT 169 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || ||||||||||| |||||||| || | || || ||| || Sbjct 1061 ACTAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTTGTCCTCT 1002 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| || || | || | | ||| ||||| ||||| || ||||||||||| Sbjct 1001 AATTGTTTTCCTGCGAAAATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 942 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | ||||| | ||||| || |||| ||| | || || Sbjct 941 ATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCAACATCAAGAGTGATGGTTTTT 882 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| ||||| ||||| ||||||||| Sbjct 881 CCAGTCAAAGTTTTGACGAAGATTTGCATA 852 >seq22541 Length=1059 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || ||||||||||| || ||||||||| | || || || || Sbjct 463 ACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTATCCTCA 522 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 |||||||| || || |||| | | ||| ||||| ||||| || ||||||||||| Sbjct 523 AGTTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 582 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | ||||| | ||||| || || | ||| | || || Sbjct 583 ATCTTGGCTTTGACATTTTCGATAGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTT 642 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||| ||||| ||||| ||||||||| Sbjct 643 CCGGTCAAAGTTTTGACGAAGATTTGCATA 672 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || ||||| ||||| ||||||||||| | || || |||||| Sbjct 235 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCAGCGAGAGTTCTGTTGTCTTCT 294 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| || || |||| | | ||| ||||| ||||| || ||||||||||| Sbjct 295 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 354 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | ||||| | ||||| || |||| || | || || Sbjct 355 ATCTTGGCTTTGACATTTTCGATAGTGTCAGAAGGTTCAACATCAAGGGTGATGGTTTTT 414 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||||| ||||| || || ||||||||| Sbjct 415 CCGGTCAAAGTTTTGACAAAGATTTGCATA 444 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || ||||||||||| || |||||||| | ||| || ||| || Sbjct 691 ACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCAGCGAGTGTTCTATTGTCCTCT 750 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| || || |||| | | ||| ||||| ||||| || ||||||||||| Sbjct 751 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 810 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | ||||| | ||||| || || | || | ||||| Sbjct 811 ATCTTGGCTTTGACATTTTCAATGGTGTCAGAAGGTTCAACATCGAGTGTAATTGTCTTT 870 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||||| || ||||||||||| Sbjct 871 CCAGTAAGAGTTTTAACAAATATTTGCAT 899 >seq33152 Length=3236 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || ||||| ||||| |||||||||||| | || || ||| || Sbjct 2886 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCAAGAGTTCTGTTGTCCTCT 2827 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||||||||| || |||| | | ||| ||||| || || || ||||||||||| Sbjct 2826 AATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 2767 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||| | | ||| | ||||| | ||||| || || | || | || || Sbjct 2766 ATTTTGGCTTTAACGTTTTCGATGGTGTCAGAAGGTTCAACATCTAAGGTGATAGTTTTA 2707 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | ||||| ||||| ||||||||| Sbjct 2706 CCGGTGAGAGTTTTGACGAAGATTTGCATA 2677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || ||||| ||||| |||||||||||| | || || ||| || Sbjct 2658 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTTGTCCTCT 2599 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||||||||| || |||| | | ||| ||||| ||||| || ||||||||||| Sbjct 2598 AATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 2539 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||| | | || | ||||| | ||||| || || | ||| | || || Sbjct 2538 ATTTTGGCTTTGACATTCTCGATGGTGTCAGAAGGTTCAACATCTAAAGTGATAGTTTTA 2479 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||||| || ||||||||||| Sbjct 2478 CCAGTGAGGGTTTTGACAAATATTTGCAT 2450 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||||| || ||||| ||||| |||||||||||| | || || ||| || Sbjct 3114 ACTAAATGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTTGTCCTCT 3055 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||||||||| || |||| | | || ||||| || || || ||||||||||| Sbjct 3054 AATTGTTTACCGGCGAAGATTAATCTCTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 2995 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 |||||| || | | ||| | || || | ||||| || || | || | || || Sbjct 2994 ATTTTTGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACATCTAAGGTGATAGTTTTA 2935 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | ||||| ||||| ||||||||| Sbjct 2934 CCAGTAAGGGTTTTGACGAAGATTTGCATA 2905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506776515181200