Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq17428 95.1 8e-15 seq22541 87.8 1e-12 seq18875 87.8 1e-12 seq28501 82.4 5e-11 >seq17428 Length=1321 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || || |||||||| ||||||||||||| | | | ||| || Sbjct 502 ACCAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCAGCGAGTGTTCTATTGTCCTCT 561 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 ||||| ||||| || ||||| | ||| || || | || || |||||||| || | Sbjct 562 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 621 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | || ||| || ||| ||| ||||| |||| ||| || ||||| || ||| Sbjct 622 ATTTTGGC---TTTGACATTTTCAATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTT 678 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | |||||| |||||||||||||| Sbjct 679 TTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 710 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT----TGGTC 33216 || ||||| | || || || ||||| ||||||||||| | ||| |||| | ||| Sbjct 730 ACTAAATGAAGAGTTGATTCCTTTTGGATATTGTAATC-GGCAA---GAGTTCTATTGTC 785 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | ||| |||||| || ||||| | ||| || || | || || |||||||| || Sbjct 786 CTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTC 845 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| ||| || ||| ||| || || |||| ||| || ||||| || || Sbjct 846 TTGAATTTTGGCTTTGACATTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGT 905 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||| || | |||||| ||||| |||||||| Sbjct 906 TTTTCCGGTCAAAGTTTTGACGAAGATTTGCAT 938 >seq22541 Length=1059 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || |||||||| ||||||||||||| | | | ||| || ||||| ||||| Sbjct 703 GTTGATTCTTTTTGGATATTGTAATCAGCGAGTGTTCTATTGTCCTCTAATTGTTTTCCT 762 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || ||||| | ||| || || | || || |||||||| || ||| ||| Sbjct 763 GCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTG 822 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| ||| ||||| |||| ||| || || || || || ||||| ||||||||| Sbjct 823 ACATTTTCAATGGTGTCAGAAGGTTCAACATCGAGTGTAATTGTCTTTCCAGTAAGAGTT 882 Query 33353 TTTACGAAAATTTGCATGTTT 33373 || || || |||||||| ||| Sbjct 883 TTAACAAATATTTGCATTTTT 903 >seq18875 Length=1247 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAA-TTGAGTTGGTCATCCAATTGCTTTCC 33231 || || || ||||| || |||||||||| | || |||| || || ||||| ||||| Sbjct 365 GTTGATTCCTTTTGGATGTTGTAATCAGCGAGTGTTCTGTTG-TCCTCTAATTGTTTTCC 307 Query 33232 ACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTT 33291 || ||||| | ||| || || | || || |||||||| || ||| ||| Sbjct 306 TGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTT 247 Query 33292 TACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGT 33351 || ||| ||| ||||| |||| || || ||||| || || ||||| |||||||| Sbjct 246 GACGTTTTCAATGGTGTCAGAAGGTTCTACATCAAGAGTGATGGTCTTTCCAGTAAGAGT 187 Query 33352 TTTTACGAAAATTTGCATGTTT 33373 ||| ||||| |||||||| ||| Sbjct 186 TTTGACGAATATTTGCATTTTT 165 >seq28501 Length=727 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGAC-AAATTGAGTTGGTCATCCAATTGCTTTCC 33231 || || |||||||||||||| |||| | || ||| | | ||| || | ||| ||||| Sbjct 435 GTAGATTCTTTTTGTATATTATAAT-ATACTAAAGTTTTATAGTCTTCAACTTGTTTTCC 493 Query 33232 ACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTT 33291 | ||| || | | ||| || || | || || |||||||| || ||| || || Sbjct 494 AGCAAAAATCATTCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTT-TGCTT 552 Query 33292 TACTGT-TTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAG 33350 || | | || || || ||| | || | | || ||||||||||||||||| || | || Sbjct 553 TAATTTCTTCTATTGTATCGCTTGGCTCTATATCAAGAGTTATCGTTTTTCCGGTTATAG 612 Query 33351 TTTTTACGAAAATTTGCATGTTT 33373 ||||||| || |||||||| ||| Sbjct 613 TTTTTACAAATATTTGCATTTTT 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318631772696430