Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq24576 107 1e-18 seq21422 107 1e-18 seq6985 104 2e-17 seq22541 96.9 2e-15 seq17428 96.9 2e-15 seq18875 91.5 1e-13 seq4855 91.5 1e-13 seq28501 89.7 4e-13 seq23852 84.2 2e-11 seq33152 82.4 5e-11 seq21031 82.4 5e-11 >seq24576 Length=959 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| || || | || ||||| || || ||| |||||||||||||||| | Sbjct 581 CCTCCTCCTAACCTAAGGACTAAATGGAGAGTAGATTCTCTTTGAATATTATAATCTGCT 640 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | | ||| || ||||| ||||||||| | || || | ||| |||| |||| Sbjct 641 AAAGTCCTATTATCTTCTAATTGCTTTCCTGCATAAATTAATCTTTGTTGGTAAGGAGGA 700 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| |||||| ||||| | | | |||||||| ||||| | Sbjct 701 ATGCCTTCTTTATCTTGAATTTTAGCTTTGATGTTTTCTATAGTATCTGAAGGCTCACAA 760 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || | |||||| || ||||| || || ||| |||||||||| Sbjct 761 TCTATTGTTAATGTTTTTCCTGTTAATGTTTTGACATATATTTGCAT 807 >seq21422 Length=9460 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCG-TGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||| | |||||| | |||||| || | || || |||||||||||||||||| | Sbjct 314 CCTCCTCTGAGTCTTAATATCAAATGGAGATATACT-TCCTTTTGAATATTATAATCGGT 256 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| | ||||| | ||||||| | || ||| || | | ||| || || |||| Sbjct 255 TAATGTTCTATCATCATTCAATTGTATACCATGAAAAATAAGTCTTTGTTGATCTGGAGG 196 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| ||| || ||| || | | | ||||| | || || || Sbjct 195 AATTCCTTCTTTATCCTGAATCTTAGCTTTCACATTCTCTATTGTATCAGATGGTTCAAC 136 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | ||||| |||||| ||||| ||||| ||||| |||||||| Sbjct 135 ATCTAAAGTAATATATTTACCAGTTAATGTCTTAACAAAAATTTGCAT 88 >seq6985 Length=5336 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 43897 TCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAA 43956 |||||| | |||||| || | ||| || ||||| | || ||||| || ||||| || Sbjct 5186 TCCTCTAAGTCTTAAAACAAGATGAAGAGTGCTATTCTTCTGAATGTTGTAATCAGCCAA 5127 Query 43957 TTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTAC 44016 | | ||| ||||||||||| || |||||||||| || ||| || || | |||| Sbjct 5126 AGTCCTATTATCCTCCAATTGTTTCCCAGCAAATATCATCCTTTGTTGATCAGGCGGTAT 5067 Query 44017 ACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATC 44076 ||||| |||||| ||| |||| ||| || | ||| |||| || | |||| Sbjct 5066 TCCTTCCTTATCTTGAATCTTTTTTTTCACATGATCAATTCTATCACTAGGAT-TACATA 5008 Query 44077 G-ACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | | ||||| ||||| || ||||||||||||||| |||| |||| Sbjct 5007 GAATAGTAATAGTTTTTCCAGTTAAAGTCTTCACATATATAGGCAT 4962 >seq22541 Length=1059 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||| | || || || || || |||||||| ||||| ||||| Sbjct 672 ACCACCTCTAAGTCTGAGGACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCAGC 731 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | | || || |||||||||||||| || || || | ||| || || |||| Sbjct 732 GAGTGTTCTATTGTCCTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGG 791 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| || || |||||| | ||| || || | || || || Sbjct 792 AATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCAATGGTGTCAGAAGGTTCAAC 851 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| |||||||| || || || | ||| || |||||||||||||| Sbjct 852 ATCGAGTGTAATTGTCTTTCCAGTAAGAGTTTTAACAAATATTTGCAT 899 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||| | || || || || || |||||||| ||||| |||||| Sbjct 444 ACCACCTCTAAGTCTGAGGACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCGGC 503 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | ||| || | |||||||||||| || || || | ||| || || |||| Sbjct 504 AAGAGTTCTATTATCCTCAAGTTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGG 563 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| || || |||||| | | | ||| || | || || || Sbjct 564 AATACCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAAGGTTCAAC 623 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||| ||||| ||||| || || || |||||||| Sbjct 624 ATCGAGAGTGATGGTTTTTCCGGTCAAAGTTTTGACGAAGATTTGCAT 671 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || |||||||||||||| || || || | ||| || || |||| | ||||||||| Sbjct 289 TCTTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTG 348 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| || || |||||| | | | ||| || | || || ||||| | || || Sbjct 349 TCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAAGGTTCAACATCAAGGGTGATG 408 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| ||||| ||||| || ||||| |||||||| Sbjct 409 GTTTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 443 >seq17428 Length=1321 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||| | ||||| || || || |||||||| ||||| ||||| Sbjct 483 ACCACCTCTAAGTCTGAGGACCAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCAGC 542 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | | || || |||||||||||||| || || || | ||| || || |||| Sbjct 543 GAGTGTTCTATTGTCCTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGG 602 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||||| |||||| | ||| || || | || || || Sbjct 603 AATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGGTGTCAGAAGGTTCAAC 662 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||| || || ||||| || || || |||||||| Sbjct 663 ATCGAGAGTGATGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 710 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || |||||||||||||| || || || | ||| || || |||| | ||||||||| Sbjct 1012 TCCTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTG 1071 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| || ||| |||||| | ||| || || | || || ||||||| || || Sbjct 1072 TCTTGGATCTTTGCTTTGACATTTTCAATGGTGTCAGAAGGTTCTACATCGAGAGTGATG 1131 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || | || || |||||||||||||| Sbjct 1132 GTTTTTCCTGTGAGTGTTTTAACAAATATTTGCAT 1166 >seq18875 Length=1247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||| | || || || || || |||||||| || || ||||| Sbjct 852 ACCACCTCTAAGTCTGAGGACTAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGC 793 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | | || || ||||||||||||||||| || || | ||| || || |||| Sbjct 792 GAGTGTTCTATTGTCCTCTAATTGTTTTCCTGCAAAGATTAATCTTTGTTGATCTGGAGG 733 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| || || |||||| | ||| |||||| | || || || Sbjct 732 AATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATAGTATCAGAAGGTTCAAC 673 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | || || ||||| || || ||||| || || || |||||||| Sbjct 672 ATCAAGAGTGATGGTTTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 625 >seq4855 Length=2037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 43897 TCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAA 43956 |||||| | ||| || || ||||||| || || ||||||||||||||||| ||| Sbjct 397 TCCTCTTAGTCTCAAAACTAAATGTAAGGTAGATTCCTTTTGAATATTATAATCACATAA 338 Query 43957 TTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTAC 44016 | | || || ||||| | |||||||| || || |||||| || | || | Sbjct 337 AGCTCTATATTCTTCTTATTGTCTACCTGCAAAAATTAATTTTTGCTGATCAGGTGGAAT 278 Query 44017 ACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATC 44076 ||||||| |||| ||||| ||| || || ||| |||||| | || || ||||| Sbjct 277 ACCTTCTACATCTTGTATTTTCATTTTCACAATTTCAATAGTATCCGATGGTTCTACATC 218 Query 44077 GACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || ||||| || || | || || ||||| |||||||| Sbjct 217 CAATGTGATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 173 >seq28501 Length=727 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC--CAA-TTGTTTTCCTGCA 43987 |||||||| |||||||||| ||| | | || ||| ||| ||||||||| ||| Sbjct 441 TCTTTTTGTATATTATAATATACTAA---AGTTTTATAGTCTTCAACTTGTTTTCCAGCA 497 Query 43988 AATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACC 44047 || |||| | ||| || || |||| | ||||||||||||| ||||||| ||| | Sbjct 498 AAAATCATTCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTTGCTTTAATT 557 Query 44048 ATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTC 44107 | | ||||| ||||| | ||| | || || ||||| ||||||| ||| || Sbjct 558 TCTTCTATTGTATCGCTTGGCTCTATATCAAGAGTTATCGTTTTTCCGGTTATAGTTTTT 617 Query 44108 ACAAATATTTGCAT 44121 |||||||||||||| Sbjct 618 ACAAATATTTGCAT 631 >seq23852 Length=994 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/181 (72%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 43939 AATATTATAATCGTTTAATTGA-CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACC 43997 |||||||||||| |||||| | | | ||| |||||||| |||||| || | || | | Sbjct 914 AATATTATAATC-TTTAATAGTTCTATTATCTTCCAATTGCTTTCCTTCATAAATTATTC 856 Query 43998 GTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAG 44057 ||| || || |||||| ||||||||||||| ||||||| ||| || | | | | Sbjct 855 TTTGTTGATCTGGAGGTATACCTTCTTTATCTTGTATTTTTTCTTTAACATTTTCTATTG 796 Query 44058 TATCTGCCGGCT-CCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC-AAATAT 44115 |||| | || || ||| | ||||| ||||| || |||||||| ||||| || ||| Sbjct 795 TATC-ACTTTCTAACAAATCTAAAGTAATAGTTTTTCCTGTTAAAGTTTTCACGAAGTAT 737 Query 44116 T 44116 | Sbjct 736 T 736 >seq33152 Length=3236 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||| | || || || || || || ||||| || || |||||| Sbjct 2677 ACCACCTCTAAGTCTGAGGACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGC 2618 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | | || || |||||||| || || || || || | ||| || || |||| Sbjct 2617 TAAGGTTCTGTTGTCCTCTAATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGAGG 2558 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||||| |||||| | | | || || | || || || Sbjct 2557 AATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCAGAAGGTTCAAC 2498 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 ||| | || || |||||||| || | || || |||||||||||||||| Sbjct 2497 ATCTAAAGTGATAGTTTTACCAGTGAGGGTTTTGACAAATATTTGCATGT 2448 >seq21031 Length=1135 Score = 82.4 bits (90), Expect = 5e-11 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 43890 ATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAAT 43949 || |||||||||| || |||||||| ||||| | || ||||||||||||||||||| Sbjct 85 ATTAACCTCCTCTTAACCTTAACACTAAATGCAAAGTCGATTCTTTTTGAATATTATAAT 144 Query 43950 C-GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATAT 43992 | | || | || | ||| |||||||||||||||||||| || Sbjct 145 CAGCAAAAGTTCCG-TTATCTTCCAATTGTTTTCCTGCAAAAAT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354615304215180