Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq19433 125 9e-24 seq30469 98.7 1e-15 seq30826 89.7 6e-13 seq31761 86.0 7e-12 seq30843 82.4 9e-11 >seq19433 Length=9611 Score = 125 bits (138), Expect = 9e-24 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| | |||| ||| || | ||| ||| ||||||||||||| |||||||| Sbjct 9093 TAAAGTAAAATGTAGAACTATAAGAATTCCTCAAATAGGTGATAAATTTGCTTCAAGACA 9034 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || |||||||| ||| ||||||| |||||| || |||||||||||||||| || || Sbjct 9033 TGGCCAAAAAGGAACAATAGGTATGACTTATCGACAGGAAGATATGCCTTTTAATATCGA 8974 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||| || ||| ||||||| || || |||||| ||||||| |||||||| Sbjct 8973 GGGAATAACACCTGATATTATTATAAATCCTCATGCTATTCCAAGCCGAATGAC 8920 >seq30469 Length=3929 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 19362 AAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATC 19421 ||||||| ||||| || || || || ||||||||| ||| ||||||| |||| Sbjct 3026 AAATAGGGGATAAATTCGCCTCAAGACATGGTCAAAAAGGAACAATAGGTATGACCTATC 3085 Query 19422 GTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCAC 19481 | ||||||||||||||||||| || || || ||| || ||| ||||| | || || | Sbjct 3086 GCCAAGAAGATATGCCTTTTAATATTGAGGGGATAACTCCTGATATTATTGTAAATCCTC 3145 Query 19482 ATGCTTTTCCAAGTCGAATGAC 19503 |||| |||||||| ||||||| Sbjct 3146 ATGCCATTCCAAGTAGAATGAC 3167 >seq30826 Length=3897 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 || ||| ||| |||| ||||| ||| |||| || ||||||||| ||||||||| Sbjct 906 AAGACCAGAATTAGGCGATAAATTTTCTTCGAGACATGGTCAAAAAGGAGTATGTGGTAT 847 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTG-CCGGATCTTATTA 19472 ||| || ||||||||||||||| |||| | | | ||| | ||| || ||| | || | Sbjct 846 GATAATTCCTCAAGAAGATATGCCATTTAATGAGCAAGGT-TGGTGTCCAGATTTAATAA 788 Query 19473 TTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | || || |||| ||| |||||||| ||||| Sbjct 787 TGAATCCTCATGGTTTCCCAAGTCGTATGAC 757 >seq31761 Length=3605 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 |||||||| || |||||||| |||||||||||||| |||||||||| | || || Sbjct 848 CAAAAAGGAACTATTGGTATGACCTATCGTCAAGAAGACATGCCTTTTAACATCGAGGGA 789 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||| ||| ||| |||| | || || |||||| | |||||| ||||||| Sbjct 788 ATAACGCCTGATATTATCGTAAATCCCCATGCTATCCCAAGTAGAATGAC 739 >seq30843 Length=3890 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 19334 ATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCT 19393 ||||||| |||| | || || ||| |||||||||||| ||| | || || | Sbjct 1014 ATTAAATATAGATATGATAGAAATCCTATAATAGGTGATAAATTTTCATCAAGGCATGGT 955 Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 |||||||| | || | |||| ||||| |||||||| |||||| || | || Sbjct 954 CAAAAAGGAGTCCTTAGTCAATTATATCCTCAAGTTGATATGCCCTTTACTGAACAAGGA 895 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| || || ||| || || || ||||||||||||||| ||||||| Sbjct 894 ATAGTACCTGACTGTATAATAAATCCTCATGCTTTTCCAAGTAGAATGAC 845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595592424306000