Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq33152 104 2e-17 seq17428 93.3 4e-14 >seq33152 Length=3236 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || |||||||| | || || |||||||| |||||||||||| | ||| | |||| Sbjct 3117 AGGACTAAATGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTTGTCC 3058 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 |||| || || || ||| ||||||| | ||| || || || ||||| ||||||||||| Sbjct 3057 TCTAATTGTTTACCGGCGAAGATTAATCTCTGTTGATCTGGTGGGATACCTTCTTTGTCT 2998 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 |||||| ||| | | || | ||||| | | || | || | ||| | ||| Sbjct 2997 TGGATTTTTGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACATCTAAGGTGATAGTT 2938 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || || ||||| ||||| || ||||| Sbjct 2937 TTACCAGTAAGGGTTTTGACGAAGATTTGCAT 2906 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || ||||| || | || || |||||||| |||||||||||| | || | |||| Sbjct 2889 AGGACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCAAGAGTTCTGTTGTCC 2830 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 |||| || || || ||| ||||||| | || || || || ||||| ||||||||||| Sbjct 2829 TCTAATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTGTCT 2770 Query 131143 GTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 |||||| |||| | | | || | || || | | || | || | ||| | || Sbjct 2769 TGGATTTT-GGCTTTAACGTTTTCGATGGTGTCAGAAGGTTCAACATCTAAGGTGATAGT 2711 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||||||| |||||||| ||||| || ||||| Sbjct 2710 TTTACCGGTGAGAGTTTTGACGAAGATTTGCAT 2678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || ||||| || | || || |||||||| |||||||||||| | ||| | |||| Sbjct 2661 AGGACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTTGTCC 2602 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 |||| || || || ||| ||||||| | || || || ||||| || ||||||||||| Sbjct 2601 TCTAATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCT 2542 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 |||||| |||| | ||| | || || | | || | || | || | ||| Sbjct 2541 TGGATTTTGGCTTTGACATTCTCGATGGTGTCAGAAGGTTCAACATCTAAAGTGATAGTT 2482 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||| || || ||||| || || || |||||| Sbjct 2481 TTACCAGTGAGGGTTTTGACAAATATTTGCATG 2449 >seq17428 Length=1321 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || |||||||| | || || |||||||| || ||||||||| | || | |||| Sbjct 727 AGGACTAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCC 786 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || || || || ||| ||||||| | || || || ||||| || ||||||||||| Sbjct 787 TCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTC- 845 Query 131143 GTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| ||| || |||| | || | |||||| | | || | || | || | ||| Sbjct 846 TTGAATTTTGGCTTTGACATTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGT 905 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| ||||| | |||||| ||||| || ||||| Sbjct 906 TTTTCCGGTCAAAGTTTTGACGAAGATTTGCAT 938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471791337494400