Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq28501 132 4e-26 seq17428 111 1e-19 seq28493 104 2e-17 seq24576 104 2e-17 seq22541 98.7 8e-16 seq21422 95.1 1e-14 seq21031 93.3 4e-14 seq18875 93.3 4e-14 seq4855 91.5 1e-13 seq28577 89.7 4e-13 seq23954 84.2 2e-11 >seq28501 Length=727 Score = 132 bits (146), Expect = 4e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 |||||||||||| ||||| ||||| || ||||| ||||| || || | || | || || Sbjct 635 AAAAATGCAAATATTTGTAAAAACTATAACCGGAAAAACGATAACTCTTGATATAGAGCC 576 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 |||||| | | | | | ||| ||||||| || |||||||| |||| || Sbjct 575 AAGCGATACAATAGAAGAAATTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGA 516 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||||||||| | |||| ||| || |||||| | ||||| | ||||||| | | |||| Sbjct 515 TCAACAAAGAATGATTTTTGCTGGAAAACAAGTTGAAGACTATAAAACTTTAGTATATTA 456 Query 111363 TAATATACAAAAAGAATCTACACTACAT 111390 ||||||||||||||||||||| || ||| Sbjct 455 TAATATACAAAAAGAATCTACTCTTCAT 428 >seq17428 Length=1321 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || |||||||| ||||||| |||||||| || | || ||||| Sbjct 938 ATGCAAATCTTCGTCAAAACTTTGACCGGAAAAACCATCACTCTTGATGTTGAACCTTCT 879 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| |||||| ||||||||||| |||| |||||| Sbjct 878 GATACTATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 819 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | || | || || |||||| | || || || |||| | |||||||| ||| Sbjct 818 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGACAATAGAACTCTTGCCGATTACAAT 759 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||| ||||| || || |||||||| Sbjct 758 ATCCAAAAGGAATCAACTCTTCATTTAGT 730 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| |||||||| |||| || |||||||| || | || ||||| Sbjct 710 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCT 651 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| ||||| ||||||||||| |||| |||||| Sbjct 650 GACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 591 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | || | || || |||||||| || || || ||| | || ||||| ||| Sbjct 590 CAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAATAGAACACTCGCTGATTACAAT 531 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||||||||| || || || || || Sbjct 530 ATCCAAAAAGAATCAACTCTTCACTTGGT 502 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 |||||||||||| ||||| ||||| | || || |||||||| || | || ||||| Sbjct 1170 AAAAATGCAAATATTTGTTAAAACACTCACAGGAAAAACCATCACTCTCGATGTAGAACC 1111 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 || | ||| | || ||| ||| || ||||||||||| |||| || Sbjct 1110 TTCTGACACCATTGAAAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCAGA 1051 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 ||||||||| | || | || || |||||||| || || | |||| | || ||||| Sbjct 1050 TCAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAACAGAACTCTTGCTGATTA 991 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGT 111395 || || ||||| ||||| || || || ||||| Sbjct 990 CAACATCCAAAAGGAATCAACTCTTCACTTAGT 958 >seq28493 Length=728 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 111262 GTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTAT 111321 || ||| ||||||| || |||||| | |||| | ||||||||||| ||||||| | Sbjct 463 GTGAAATCAAAAATTCAAGAAAAAGAAAGAATTCCTATAGATCAACAAAGACTTATTTTT 522 Query 111322 GCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCT 111381 || || ||| || |||||||| || |||| | || ||||||||||| ||||||||||| Sbjct 523 GCTGGTAAAGAAATGGAAGATCATAGAACTTTAGCTGATTATAATATCCAAAAAGAATCA 582 Query 111382 ACACTACATTTA 111393 || | |||||| Sbjct 583 ACTGTTCATTTA 594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 || || ||||| ||||| ||||||||||| ||||||| ||| || | |||||||||| Sbjct 253 GATAAGGAAGGAATTCCCCCAGATCAACAAAGACTTATTTTTGCTGGTATACAATTGGAA 312 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTA 111393 ||| | ||| | | ||||||||||| |||||||| | || || |||||| Sbjct 313 GATAAAAGGACTTTAGTTGATTATAATATCCAAAAAGATTTAACTCTTCATTTA 366 >seq24576 Length=959 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 111181 TTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAA 111240 |||||||||||||| | ||||||||| | || || ||||| | || | || || Sbjct 813 TTAAAAATGCAAATATATGTCAAAACATTAACAGGAAAAACATTAACAATAGATTGTGAG 754 Query 111241 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111300 || ||| || | | | | ||| |||||| || ||||||||| |||| Sbjct 753 CCTTCAGATACTATAGAAAACATCAAAGCTAAAATTCAAGATAAAGAAGGCATTCCTCCT 694 Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 | |||||||| | |||||||| || || ||||| |||||| || ||| | || ||| Sbjct 693 TACCAACAAAGATTAATTTATGCAGGAAAGCAATTAGAAGATAATAGGACTTTAGCAGAT 634 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGT 111395 |||||||| |||| ||||||||| || |||||||| Sbjct 633 TATAATATTCAAAGAGAATCTACTCTCCATTTAGT 599 >seq22541 Length=1059 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || |||||||| ||||||| |||||||| || | || ||||| Sbjct 671 ATGCAAATCTTCGTCAAAACTTTGACCGGAAAAACCATCACTCTCGATGTTGAACCTTCT 612 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || | | | || ||| || || ||||||||||| |||| |||||| Sbjct 611 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 552 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | || | || || |||||| | || ||| || |||| | |||||||| ||| Sbjct 551 CAAAGATTAATCTTCGCAGGAAAACAACTTGAGGATAATAGAACTCTTGCCGATTACAAT 492 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||||||||| || || || ||||| Sbjct 491 ATCCAAAAAGAATCAACTCTTCACTTAGT 463 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||||||||| ||||||| |||||||| ||| | || ||||| Sbjct 443 ATGCAAATCTTTGTCAAAACTTTGACCGGAAAAACCATCACCCTTGATGTTGAACCTTCT 384 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || | | | || ||| || || ||||||||||| |||| |||||| Sbjct 383 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 324 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | || | || || |||||||| ||||| | |||| | || ||||| || Sbjct 323 CAAAGATTAATCTTCGCAGGAAAACAATTAGAAGACAACAGAACTCTCGCTGATTACAAC 264 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAA-TAAATAA 111423 || ||||| ||||| || || || ||||| | | || | ||||| || ||||||| Sbjct 263 ATCCAAAAGGAATCAACTCTTCACTTAGTCCTCAGACTCAGAGGTGGAAACTAAATAA 206 >seq21422 Length=9460 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 111270 AAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAA 111329 ||||||| || |||||||| |||| | ||||||||||| |||||| ||| || || Sbjct 399 AAAAATTCAAGATAAAGAAGGAATTCCTATTGATCAACAAAGACTTATTCTTGCTGGTAA 458 Query 111330 ACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAAT 111379 | || |||||||| || |||| | || ||||||||||| |||||||||| Sbjct 459 AGAAATGGAAGATAATAGAACTTTAGCTGATTATAATATCCAAAAAGAAT 508 >seq21031 Length=1135 Score = 93.3 bits (102), Expect = 4e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364 ||||||| ||||||| ||| || ||||||||||||||| |||| | || ||||||| Sbjct 198 AACAAAGACTTATTTTTGCAGGAAAACAATTGGAAGATAACGGAACTTTTGCTGATTATA 139 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 |||| ||||||||||| || | ||||||||||| Sbjct 138 ATATTCAAAAAGAATCGACTTTGCATTTAGTGTT 105 >seq18875 Length=1247 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || |||||||| |||| || |||||||| || | || ||||| Sbjct 625 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTTGATGTTGAACCTTCT 684 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| || || ||||||||||| |||| |||||| Sbjct 685 GATACTATTGAAAACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 744 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | || | ||| || |||||||| || || || ||| | || ||||| || Sbjct 745 CAAAGATTAATCTTTGCAGGAAAACAATTAGAGGACAATAGAACACTCGCTGATTACAAC 804 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||||||||| || || || ||||| Sbjct 805 ATCCAAAAAGAATCAACTCTTCACTTAGT 833 >seq4855 Length=2037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 111180 TTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGA 111239 || ||| |||||||||||||||||||| | || || ||||| || || |||| || Sbjct 166 TTGAAAGATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATCACATTGGATGTAGA 225 Query 111240 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111299 ||| ||| || ||| || ||| ||||| || |||||| |||| Sbjct 226 ACCATCGGATACTATTGAAATTGTGAAAATGAAAATACAAGATGTAGAAGGTATTCCACC 285 Query 111300 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111359 ||||| |||| | |||| ||| || | ||||| ||||| | || | || | || Sbjct 286 TGATCAGCAAAAATTAATTTTTGCAGGTAGACAATAAGAAGAATATAGAGCTTTATGTGA 345 Query 111360 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||||||||| ||||| |||||||| |||||||||| ||| Sbjct 346 TTATAATATTCAAAAGGAATCTACCTTACATTTAGTTTTG 385 >seq28577 Length=722 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 || |||||| | |||| || ||||||| ||||||| ||| || ||| || ||||| Sbjct 295 GAAAAAGAAAGAATTCCTAAAGAGCAACAAAAACTTATTTTTGCTGGTAAAGAAATGGAA 236 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTA 111393 ||| || |||| | || ||||||||||| ||||||||||| || || |||||| Sbjct 235 GATAATAGAACTTTAGCTGATTATAATATCCAAAAAGAATCAACTCTTCATTTA 182 >seq23954 Length=989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 111283 AAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT 111342 || ||||| ||||| | || |||||||| | |||| |||||| |||||||| ||||| Sbjct 842 AAGGAAGGTATTCCCCTGGACCAACAAAGATTAATTTTTGCGGGAAAACAATTAGAAGAG 901 Query 111343 TCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || |||| | ||||||||||| || |||||||| || | |||||||| || Sbjct 902 AATAGAACTTTTAATGATTATAATATTCAGAAAGAATCAACTTTGCATTTAGTTTT 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422846477047000