Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq28501 109 4e-19 seq17428 93.3 3e-14 seq22541 82.4 5e-11 >seq28501 Length=727 Score = 109 bits (120), Expect = 4e-19 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||||||| | ||||| |||| || ||||| || || | || | || ||| Sbjct 634 AAAATGCAAATATTTGTAAAAACTATAACCGGAAAAACGATAACTCTTGATATAGA-GCC 576 Query 21891 --GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAA 21948 || || || | | || |||| ||||||| |||||||| ||| | ||| | Sbjct 575 AAGC-GATACAATAGAAGAAATTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAG 517 Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 | ||||| ||| | || |||||||| |||||| | ||||| | |||||| | | ||| Sbjct 516 ATCAACAAAGAATGATTTTTGCTGGAAAACAAGTTGAAGACTATAAAACTTTAGTATATT 457 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 | ||||| || || |||||||||||||||| || ||| Sbjct 456 ATAATATACAAAAAGAATCTACTCTTCATAATGTCTTA 419 >seq17428 Length=1321 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| || || || |||||||| || | || ||| | | Sbjct 938 ATGCAAATCTTCGTCAAAACTTTGACCGGAAAAACCATCACTCTTGATGTTGAACCTTCT 879 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || ||||| ||| | ||| | | ||| Sbjct 878 GATACTATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 819 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | ||||| ||||| |||||||| || || | |||| | |||||||||||| Sbjct 818 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGACAATAGAACTCTTGCCGATTACAAT 759 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 || || |||||||| ||||||||| Sbjct 758 ATCCAAAAGGAATCAACTCTTCAT 735 >seq22541 Length=1059 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| ||| | ||| | | ||||| ||| | ||||| || || |||||||| || Sbjct 578 GACAAAGAAGGTATTCCTCCAGATCAACAAAGATTAATCTTCGCAGGAAAACAACTTGAG 519 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||| | |||| | |||||||||||||| || || ||||| |||||||| Sbjct 518 GATAATAGAACTCTTGCCGATTACAATATCCAAAAAGAATCAACTCTTCA 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357960973012390