Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq18875 109 5e-19 seq17428 109 5e-19 seq28501 98.7 1e-15 seq22541 96.9 3e-15 seq33152 87.8 2e-12 >seq18875 Length=1247 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| |||| || ||||||||||| || |||||||| || | || | Sbjct 612 TCTGAGGACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATT 553 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||| ||||| || || ||||| | || | | || || || |||||||| |||||||| Sbjct 552 GTCCTCAAGTTGTTTTCCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTT 493 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||||| |||| ||||| ||| || | || ||| | || || || | ||| | Sbjct 492 GTCTTGTA-TTTTGGCTTTGACATTTTCGATGGTGTCAGAAGGTTCAACATCGAGAGTGA 434 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || ||||||||||| ||||| |||||||| Sbjct 433 TGGTTTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 397 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| |||| || ||||||||||| ||||||||||| |||| || | Sbjct 840 TCTGAGGACTAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGCGAGTGTTCTATT 781 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||| || | || || || ||| | || | | || || || |||||||| |||||||| Sbjct 780 GTCCTCTAATTGTTTTCCTGCAAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTT 721 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| | | || ||||| || || | |||||| | || || || | ||| | Sbjct 720 GTCTTGGA-TCTTGGCTTTGACGTTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGA 662 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || ||||||||||| ||||| |||||||| Sbjct 661 TGGTTTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 625 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| |||| || ||||||||||| |||||||| || |||| || | Sbjct 1068 TCTGAGGACTAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTT 1009 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||| || | || || || || |||| | | || || || |||||||| |||||||| Sbjct 1008 GTCCTCTAATTGTTTTCCTGCGAAAATTAATCTTTGTTGATCTGGAGGAATACCTTCTTT 949 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| | | || ||||| || || | || ||| | || || || | ||| | Sbjct 948 GTCTTGGA-TCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCAACATCAAGAGTGA 890 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || ||||||||||| ||||| |||||||| Sbjct 889 TGGTTTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 853 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| |||| || ||||| ||||| ||||||||||| |||| || | Sbjct 384 TCTGAGGACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCAGCGAGTGTTCTGTT 325 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||| || | || || || || | || | | || || || |||||||| |||||||| Sbjct 324 GTCCTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTT 265 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| | | || ||||| || || | || ||| | || || || | ||| | Sbjct 264 GTCTTGGA-TCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCTACATCAAGAGTGA 206 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || || | |||||| ||||| ||||||||||| Sbjct 205 TGGTCTTTCCAGTAAGAGTTTTGACGAATATTTGCATTTT 166 >seq17428 Length=1321 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| ||||| || ||||| ||||| || |||||||| || | || | Sbjct 723 TCTGAGGACTAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCGGCAAGAGTTCTATT 782 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||| ||||| || || || || | || | | || || || |||||||| |||||||| Sbjct 783 GTCCTCAAGTTGTTTTCCAGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTT 842 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| ||||| ||||| ||| || | |||||| | || || || | ||| | Sbjct 843 GTCTTGAATTTTG-GCTTTGACATTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGA 901 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || |||||||||||||| ||||| |||||||| Sbjct 902 TGGTTTTTCCGGTCAAAGTTTTGACGAAGATTTGCAT 938 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || || | |||| || ||||||||||| || |||||||| |||| || | Sbjct 495 TCTGAGGACCAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCAGCGAGTGTTCTATT 554 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||| || | || || || || | || | | || || || |||||||| |||||||| Sbjct 555 GTCCTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTT 614 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| | |||| ||||| ||| || | || ||| | || || || | ||| | Sbjct 615 GTCTTGGA-TTTTGGCTTTGACATTTTCAATGGTGTCAGAAGGTTCAACATCGAGAGTGA 673 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || ||||||||||| |||||||||||||| Sbjct 674 TGGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || || | |||| || ||||||||||| |||||||| || |||| || | Sbjct 267 TCTTAGGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTT 326 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||| | || || || || | || | | || || || |||||||| |||||||| Sbjct 327 GTCTTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTT 386 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| | | || ||||| || || | || ||| | || || || | ||| | Sbjct 387 GTCTTGGA-TCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCAACGTCAAGAGTGA 445 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || ||||||||||| ||||| |||||||| Sbjct 446 TGGTTTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 482 >seq28501 Length=727 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| || ||||||||||| || || |||| | | | || |||||||| || Sbjct 428 ATGAAGAGTAGATTCTTTTTGTATATTATAATATACTAAAGTTTTATAGTCTTCAACTTG 487 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || || ||| |||| | | || || || |||||||| |||||||| ||||| ||||| Sbjct 488 TTTTCCAGCAAAAATCATTCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTT 547 Query 64360 TTGCTTTACAACCTCC-ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGG 64418 | |||||| || | | |||||| | | || | || | ||||| || || |||| Sbjct 548 T-GCTTTAATTTCTTCTATTGTATCGCTTGGCTCTATATCAAGAGTTATCGTTTTTCCGG 606 Query 64419 TCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | ||||||||| || ||||||||||| Sbjct 607 TTATAGTTTTTACAAATATTTGCATTTT 634 >seq22541 Length=1059 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| |||| || ||||||||||| || |||||||| || | || | Sbjct 456 TCTGAGGACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATT 515 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 || ||||| || || || || | || | | || || || |||||||| |||||||| Sbjct 516 ATCCTCAAGTTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTT 575 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| | | || ||||| ||| || | || ||| | || || || | ||| | Sbjct 576 GTCTTGGA-TCTTGGCTTTGACATTTTCGATAGTGTCAGAAGGTTCAACATCGAGAGTGA 634 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || |||||||||||||| ||||| |||||||| Sbjct 635 TGGTTTTTCCGGTCAAAGTTTTGACGAAGATTTGCAT 671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| |||| || ||||| ||||| ||||||||||| |||| || | Sbjct 228 TCTGAGGACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCAGCGAGAGTTCTGTT 287 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||| | || || || || | || | | || || || |||||||| |||||||| Sbjct 288 GTCTTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTT 347 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| | | || ||||| ||| || | || ||| | || || || | || | Sbjct 348 GTCTTGGA-TCTTGGCTTTGACATTTTCGATAGTGTCAGAAGGTTCAACATCAAGGGTGA 406 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || |||||||||||||| || || |||||||| Sbjct 407 TGGTTTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 443 >seq33152 Length=3236 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| |||| || ||||| ||||| ||||||||||| || | ||| | Sbjct 2665 TCTGAGGACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTT 2606 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||| || | || || ||||| | || | | || || || |||||||| |||||||| Sbjct 2605 GTCCTCTAATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTT 2546 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| | |||| ||||| ||| ||| | || ||| | || || |||| ||| | Sbjct 2545 GTCTTGGA-TTTTGGCTTTGACATTCTCGATGGTGTCAGAAGGTTCAACATCTAAAGTGA 2487 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || || || | ||||| || || |||||||| || Sbjct 2486 TAGTTTTACCAGTGAGGGTTTTGACAAATATTTGCATGTT 2447 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| ||||| || ||||| ||||| ||||||||||| || | ||| | Sbjct 3121 TCTGAGGACTAAATGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTT 3062 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||| || | || || ||||| | || | | ||| || || || || || |||||||| Sbjct 3061 GTCCTCTAATTGTTTACCGGCGAAGATTAATCTCTGTTGATCTGGTGGGATACCTTCTTT 3002 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| |||||| ||| || || | |||||| | || || |||| || | Sbjct 3001 GTCTTGGATTTTTGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACATCTAAGGTGAT 2942 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || || | ||||| ||||| |||||||| Sbjct 2941 AGTTTTACCAGTAAGGGTTTTGACGAAGATTTGCAT 2906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499410372905400