Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq33152 105 7e-18 seq18875 98.7 1e-15 seq17428 93.3 4e-14 >seq33152 Length=3236 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 ||||| || | |||| |||||||| |||||||| ||| | || | |||||| Sbjct 2658 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTTGTCCTCT 2599 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||||||||||| |||||| | ||||| || ||||| |||||||||||||| | Sbjct 2598 AATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 2539 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 ||||| ||| | | || | |||||| | | || || || | || | |||||| Sbjct 2538 ATTTTGGCTTTGACATTCTCGATGGTGTCAGAAGGTTCAACATCTAAAGTGATAGTTTTA 2479 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAA 138623 ||||| || ||||| ||||| || |||||| || ||| Sbjct 2478 CCAGTGAGGGTTTTGACAAATATTTGCATGTTTTTTAA 2441 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 ||||| || | |||| |||||||| |||||||| ||| | ||| | |||||| Sbjct 2886 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCAAGAGTTCTGTTGTCCTCT 2827 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||||||||||| |||||| | ||||| || || || |||||||||||||| | Sbjct 2826 AATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 2767 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 ||||| ||| | | ||| | |||||| | | || || || | || | |||||| Sbjct 2766 ATTTTGGCTTTAACGTTTTCGATGGTGTCAGAAGGTTCAACATCTAAGGTGATAGTTTTA 2707 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||||||| || || || ||||| Sbjct 2706 CCGGTGAGAGTTTTGACGAAGATTTGCAT 2678 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||||||| | |||| |||||||| |||||||| ||| | || | |||||| Sbjct 3114 ACTAAATGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGTTCTGTTGTCCTCT 3055 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||||||||||| |||||| | |||||| || || || |||||||||||||| | Sbjct 3054 AATTGTTTACCGGCGAAGATTAATCTCTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 2995 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 |||||| || | | ||| | ||| || | | || || || | || | |||||| Sbjct 2994 ATTTTTGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACATCTAAGGTGATAGTTTTA 2935 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || ||||| || || || ||||| Sbjct 2934 CCAGTAAGGGTTTTGACGAAGATTTGCAT 2906 >seq18875 Length=1247 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 ||||| || | |||| || ||||| || ||||| ||| | ||| | |||||| Sbjct 605 ACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCA 546 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 |||||||| |||| |||||| | ||||| || ||||| |||||||||||||| Sbjct 545 AGTTGTTTTCCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGT 486 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 ||||| ||| | | ||| | |||||| | | || || |||| || | ||||| Sbjct 485 ATTTTGGCTTTGACATTTTCGATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTT 426 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| |||||| || || || ||||| Sbjct 425 CCAGTCAAAGTTTTGACGAAGATTTGCAT 397 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 ||||| || | |||| || ||||| ||||||||||| | ||| | |||||| Sbjct 1061 ACTAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTTGTCCTCT 1002 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | |||||| || | | |||| | ||||| || ||||| |||||||||||||| | Sbjct 1001 AATTGTTTTCCTGCGAAAATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 942 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || || ||| | | ||| | |||||| | | || || || | || | ||||| Sbjct 941 ATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCAACATCAAGAGTGATGGTTTTT 882 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| |||||| || || || ||||| Sbjct 881 CCAGTCAAAGTTTTGACGAAGATTTGCAT 853 >seq17428 Length=1321 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 ||||| || | |||| |||||||| |||||||| || | ||| | |||||| Sbjct 958 ACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCAGCAAGAGTTCTGTTGTCCTCT 1017 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | |||||| || | |||||| | ||||| || ||||| |||||||||||||| | Sbjct 1018 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 1077 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || ||| ||| | | ||| | |||||| | | || || |||| || | ||||| Sbjct 1078 ATCTTTGCTTTGACATTTTCAATGGTGTCAGAAGGTTCTACATCGAGAGTGATGGTTTTT 1137 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || ||||| ||||| || ||||| Sbjct 1138 CCTGTGAGTGTTTTAACAAATATTTGCAT 1166 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 |||||| | |||||| || | |||||| | ||||| || ||||| ||||||||||| Sbjct 555 GTCCTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTT 614 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| |||||| ||| | | ||| | |||||| | | || || |||| || | Sbjct 615 GTCTTGGATTTTGGCTTTGACATTTTCAATGGTGTCAGAAGGTTCAACATCGAGAGTGAT 674 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||||| |||||| || ||||| ||||| Sbjct 675 GGTTTTTCCAGTCAAAGTTTTGACGAAAATTTGCAT 710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||||||| | |||| |||||||| || ||||| ||| | ||| | |||||| Sbjct 730 ACTAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCA 789 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 |||||||| || | |||||| | ||||| || ||||| |||||||||||||| || Sbjct 790 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTC-TTG 848 Query 138526 ATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | |||| | ||| | | ||| | || || | | || || || | || | ||||| Sbjct 849 AATTTTGGCTTTGACATTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGTTTT 908 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||| |||||| || || || ||||| Sbjct 909 TCCGGTCAAAGTTTTGACGAAGATTTGCAT 938 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || ||||| ||||||||||| | ||| | ||| || | |||||| || | Sbjct 287 TTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGTTCTGTTGTCTTCTAATTGTTTTCCTG 346 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||||| | ||||| || ||||| |||||||||||||| ||| || ||| | Sbjct 347 CGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGA 406 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | ||| | |||||| | | || || || | || | ||||| ||||||| ||||| Sbjct 407 CGTTTTCAATGGTGTCAGAAGGTTCAACGTCAAGAGTGATGGTTTTTCCAGTCAAAGTTT 466 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 467 TGACGAAGATTTGCAT 482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496029559885200