Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq22541 104 2e-17 seq17428 102 8e-17 seq18875 98.7 9e-16 >seq22541 Length=1059 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| |||||||||||| | | || | | ||| || || |||||||| Sbjct 475 GTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTATCCTCAAGTTGTTTTCCT 534 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| |||| || ||||| ||||| || || || ||||| ||| || ||| Sbjct 535 GCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTG 594 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| ||||| | | || || |||| || | ||||| ||||||| |||| Sbjct 595 ACATTTTCGATAGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTTCCGGTCAAAGTT 654 Query 127097 TTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 655 TTGACGAAGATTTGCAT 671 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| ||||||||||| | | || | | || |||| |||||||| Sbjct 703 GTTGATTCTTTTTGGATATTGTAATCAGCGAGTGTTCTATTGTCCTCTAATTGTTTTCCT 762 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| |||| || ||||| ||||| || || || ||||| ||| || ||| Sbjct 763 GCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCTTTG 822 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | | || || |||| || | || || || || |||||| Sbjct 823 ACATTTTCAATGGTGTCAGAAGGTTCAACATCGAGTGTAATTGTCTTTCCAGTAAGAGTT 882 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 883 TTAACAAATATTTGCAT 899 >seq17428 Length=1321 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || |||||||| ||||||||||| | | || | | || ||| Sbjct 502 ACCAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCAGCGAGTGTTCTATTGTCCTCT 561 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | |||||||| ||| |||| |||| || ||||| ||||| || || || ||||| | Sbjct 562 AATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 621 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| |||| | ||| | |||||| | | || || |||| || | ||||| Sbjct 622 ATTTTGGCTTTGACATTTTCAATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTT 681 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| |||||| || ||||| ||||| Sbjct 682 CCAGTCAAAGTTTTGACGAAAATTTGCAT 710 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||| | || || || ||||| |||||||||||| | | || | | || || Sbjct 730 ACTAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCA 789 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || |||||||||||| |||| |||| || ||||| ||||| || || || |||| | || Sbjct 790 AGTTGTTTTCCAGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGT-CTTG 848 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | ||| || |||| | ||| | || || | | || || || | || | ||||| Sbjct 849 AATTTTGGCTTTGACATTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGTTTT 908 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||| |||||| || || || ||||| Sbjct 909 TCCGGTCAAAGTTTTGACGAAGATTTGCAT 938 >seq18875 Length=1247 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| |||||||||||| | | || | | || || || |||||||| Sbjct 593 GTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCAAGTTGTTTTCCG 534 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| |||| || ||||| ||||| || || || ||||| ||||| ||| Sbjct 533 GCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGTATTTTGGCTTTG 474 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| |||||| | | || || |||| || | ||||| || |||| |||| Sbjct 473 ACATTTTCGATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTTCCAGTCAAAGTT 414 Query 127097 TTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 413 TTGACGAAGATTTGCAT 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475277700968400