Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq33152 114 3e-20 seq17428 107 5e-18 seq18875 102 2e-16 >seq33152 Length=3236 Score = 114 bits (126), Expect = 3e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| ||||| | ||| ||||| || |||||||||| |||||| || || || || Sbjct 2671 TCTAAGTCTGAGGACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGT 2612 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || || | || || ||||||||||| | | || || || ||| ||| || Sbjct 2611 TCTGTTGTCCTCTAATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACC 2552 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| || || || ||| || || || |||| |||||| | | ||| ||||| | Sbjct 2551 TTCTTTGTCTTGGAT-TTTGGCTTTGACATTCTCGATGGTGTCAGAAGGTTCAACATCTA 2493 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 2492 AAGTGATAGTTTTACCAGTGAGGGTTTTGACAAATATTTG 2453 Score = 114 bits (126), Expect = 3e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| ||||| | ||| ||||| || |||||||||| |||||| || || | ||| Sbjct 2899 TCTAAGTCTGAGGACTAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCAAGAGT 2840 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || || | || || ||||||||||| | | || || || || || || Sbjct 2839 TCTGTTGTCCTCTAATTGTTTACCGGCGAAGATTAATCTTTGTTGATCTGGTGGGATACC 2780 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| || || || ||| |||| | || ||||| |||||| | | ||| ||||| | Sbjct 2779 TTCTTTGTCTTGGAT-TTTGGCTTTAACGTTTTCGATGGTGTCAGAAGGTTCAACATCTA 2721 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || ||||| ||||||||||| || || ||||| Sbjct 2720 AGGTGATAGTTTTACCGGTGAGAGTTTTGACGAAGATTTG 2681 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| ||||| | || ||||| || |||||||||| |||||| || || || || Sbjct 3127 TCTAAGTCTGAGGACTAAATGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCTAAGGT 3068 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || || | || || ||||||||||| | | ||| || || || || || Sbjct 3067 TCTGTTGTCCTCTAATTGTTTACCGGCGAAGATTAATCTCTGTTGATCTGGTGGGATACC 3008 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || || ||| ||| ||| ||| | ||| || | | ||| ||||| || Sbjct 3007 TTCTTTGTCTTGGATTTTTGCCTTAACGTTTTCAATGGTATCAGAAGGTTCAACATCTAA 2948 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || ||||| || || ||||| Sbjct 2947 GGTGATAGTTTTACCAGTAAGGGTTTTGACGAAGATTTG 2909 >seq17428 Length=1321 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| ||||| | ||| ||||| || || ||||||| |||||||||||| | ||| Sbjct 261 TCTAAGTCTTAGGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGT 320 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||| | || ||||| |||||||| | | || || || ||| ||| || Sbjct 321 TCTGTTGTCTTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACC 380 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| || ||| ||| | |||||| | | ||| || || | Sbjct 381 TTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCAACGTCAAG 440 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | |||||| || || ||||| Sbjct 441 AGTGATGGTTTTTCCAGTCAAAGTTTTGACGAAGATTTG 479 >seq18875 Length=1247 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| ||||| | ||| ||||| || || ||||||| ||||| || || | ||| Sbjct 618 TCTAAGTCTGAGGACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCGGCAAGAGT 559 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || || || || |||||||||||||| | | || || || ||| ||| || Sbjct 558 TCTATTGTCCTCAAGTTGTTTTCCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACC 499 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| || || || ||| || || || ||||| |||||| | | ||| ||||| | Sbjct 498 TTCTTTGTCTTGTAT-TTTGGCTTTGACATTTTCGATGGTGTCAGAAGGTTCAACATCGA 440 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | |||||| || || ||||| Sbjct 439 GAGTGATGGTTTTTCCAGTCAAAGTTTTGACGAAGATTTG 400 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| ||||| | ||| ||||| || || ||||||| |||||||||||| | ||| Sbjct 1074 TCTAAGTCTGAGGACTAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCAGCGAGAGT 1015 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || || | || ||||| ||||| || | | || || || ||| ||| || Sbjct 1014 TCTGTTGTCCTCTAATTGTTTTCCTGCGAAAATTAATCTTTGTTGATCTGGAGGAATACC 955 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| || ||| ||| | |||||| | | ||| ||||| | Sbjct 954 TTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCAACATCAAG 895 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | |||||| || || ||||| Sbjct 894 AGTGATGGTTTTTCCAGTCAAAGTTTTGACGAAGATTTG 856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178354636339845