Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq17428 114 1e-20 seq18875 109 5e-19 seq33152 107 2e-18 seq22541 86.0 6e-12 >seq17428 Length=1321 Score = 114 bits (126), Expect = 1e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 || ||||||||||||||||| || ||||| ||||| || ||||||||||| |||| || Sbjct 1175 TTAAAAAAAATGCAAATATTTGTTAAAACACTCACAGGAAAAACCATCACTCTCGATGTA 1116 Query 38295 GAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 || | | |||| | | ||| | |||| ||| |||| |||||||| || ||||| Sbjct 1115 GAACCTTCTGACACCATTGAAAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATTCCT 1056 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 | || ||||| | | || | ||| || ||||| | || ||| | | || || Sbjct 1055 CCAGATCAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAACAGAACTCTTGCT 996 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || |||||||||||||||||| | || || || || || || Sbjct 995 GATTACAACATCCAAAAGGAATCAACTCTTCACTTAGTCCT 955 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||||||||| | ||||| || | | Sbjct 482 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTTGACGTTGAACCTTCT 423 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | |||| || |||| |||||||| || ||||| | || || Sbjct 422 GACACCATTGAAAACG-TCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCA 364 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || ||||| | || ||| | | || ||| |||||||| Sbjct 363 ACAAAGATTAATCTTCGCAGGAAAACAATTAGAAGACAACAGAACTCTCGCTGACTACAA 304 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||| ||| | || || || ||||| || Sbjct 303 CATCCAAAAAGAATCAACTCTTCACTTGGTCCT 271 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||||||||| |||| || || | | Sbjct 710 ATGCAAATTTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCT 651 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| ||||||| |||||||| || ||||| | || ||| Sbjct 650 GACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 591 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || ||||| | || ||| | | || ||| || ||||| Sbjct 590 CAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAATAGAACACTCGCTGATTACAAT 531 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||| ||| | || || || ||||| || Sbjct 530 ATCCAAAAAGAATCAACTCTTCACTTGGTCCT 499 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||||||||| | || || || | | Sbjct 938 ATGCAAATCTTCGTCAAAACTTTGACCGGAAAAACCATCACTCTTGATGTTGAACCTTCT 879 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| ||||| | |||||||| || ||||| | || ||| Sbjct 878 GATACTATTGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAA 819 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || ||||| || || ||| | | || || ||| ||||| Sbjct 818 CAAAGATTAATCTTCGCTGGAAAACAACTTGAGGACAATAGAACTCTTGCCGATTACAAT 759 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||| | || || ||||| || || Sbjct 758 ATCCAAAAGGAATCAACTCTTCATTTAGTCCT 727 >seq18875 Length=1247 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 || |||||||||||||||||||| ||||| || || || || |||||||| | || || Sbjct 160 TTAAAAAAAATGCAAATATTCGTCAAAACTCTTACTGGAAAGACCATCACTCTTGATGTA 219 Query 38295 GAGGCCACCGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCC 38353 || | | |||| | || ||||| | |||| || |||| |||||||| || ||||| Sbjct 220 GAACCTTCTGACACCATTGAAAACG-TCAAAGCCAAGATCCAAGACAAAGAAGGTATTCC 278 Query 38354 CGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 | || ||||| | | || | ||| || ||||| | || ||| | | || ||| Sbjct 279 TCCAGATCAACAAAGATTAATCTTCGCAGGAAAACAATTAGAGGACAACAGAACACTCGC 338 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || |||||||||||||||||| | || || || || || || Sbjct 339 TGATTACAACATCCAAAAGGAATCAACTCTTCACTTAGTCCT 380 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||||||||| | || || || | | Sbjct 853 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTTGATGTTGAACCTTCT 912 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | |||| || |||| |||||||| || ||||| | || || Sbjct 913 GACACCATTGAAAACG-TCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCA 971 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| ||| || ||||| | || ||| | | || ||| |||||||| Sbjct 972 ACAAAGATTAATTTTCGCAGGAAAACAATTAGAGGACAACAGAACTCTCGCTGACTACAA 1031 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||| ||| | || || || || || || Sbjct 1032 CATCCAAAAAGAATCAACTCTTCACTTAGTCCT 1064 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||||||||| |||| || || | | Sbjct 397 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAAACCATCACTCTCGATGTTGAACCTTCT 456 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| ||||| | |||||||| || ||||| | || ||| Sbjct 457 GACACCATCGAAAATGTCAAAGCCAAAATACAAGACAAAGAAGGTATTCCTCCAGATCAA 516 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || ||||| || || ||| | | || || ||| ||||| Sbjct 517 CAAAGATTAATCTTCGCCGGAAAACAACTTGAGGACAATAGAACTCTTGCCGATTACAAT 576 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||| ||| | || || || || || || Sbjct 577 ATCCAAAAAGAATCAACTCTTCACTTAGTCCT 608 >seq33152 Length=3236 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || ||||| |||||| | || || || | | Sbjct 2678 ATGCAAATCTTCGTCAAAACTCTCACCGGTAAAACTATCACCTTAGATGTTGAACCTTCT 2737 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| |||||| ||||||| |||||||| || || || | || || Sbjct 2738 GACACCATCGAAAACG-TTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 2796 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || ||||| | || ||| | | || || ||| ||||| Sbjct 2797 ACAAAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACTCTTGCCGATTACAA 2856 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||||| | || || || || || || Sbjct 2857 CATCCAAAAGGAATCAACTCTTCACTTAGTCCT 2889 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || ||||| |||||| | || || || | | Sbjct 2906 ATGCAAATCTTCGTCAAAACCCTTACTGGTAAAACTATCACCTTAGATGTTGAACCTTCT 2965 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| |||| | |||||||| |||||||| || || || | || || Sbjct 2966 GATACCATTGAAAACG-TTAAGGCAAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 3024 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | | || | ||| || ||||| | || ||| | | ||| | ||| ||||| Sbjct 3025 ACAGAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACCTTAGCCGATTACAA 3084 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||||| | || || ||||| || || Sbjct 3085 CATCCAAAAGGAATCAACTCTTCATTTAGTCCT 3117 Score = 104 bits (114), Expect = 2e-17 Identities = 157/222 (71%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 38235 TTTaaaaaa-aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGT 38293 ||||||||| ||||||||||| || ||||| ||||| || ||||| ||||| | || || Sbjct 2440 TTTAAAAAACATGCAAATATTTGTCAAAACCCTCACTGGTAAAACTATCACTTTAGATGT 2499 Query 38294 CGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCC 38353 || | | |||| | | | | | |||| ||||||| |||||||| || ||||| Sbjct 2500 TGAACCTTCTGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCC 2559 Query 38354 CGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 | || ||||| | | || | ||| || ||||| | || ||| | | ||| | Sbjct 2560 TCCAGATCAACAAAGATTAATCTTCGCCGGTAAACAATTAGAGGACAACAGAACCTTAGC 2619 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||| |||||||||||||||||| | || || || || || || Sbjct 2620 CGATTACAACATCCAAAAGGAATCAACTCTTCACTTAGTCCT 2661 >seq22541 Length=1059 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || |||||||||||| | || || || | | Sbjct 443 ATGCAAATCTTTGTCAAAACTTTGACCGGAAAAACCATCACCCTTGATGTTGAACCTTCT 384 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| || |||| |||||||| || ||||| | || ||| Sbjct 383 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 324 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || ||||| | || ||| | | || ||| || |||||| Sbjct 323 CAAAGATTAATCTTCGCAGGAAAACAATTAGAAGACAACAGAACTCTCGCTGATTACAAC 264 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||| | || || || || || || Sbjct 263 ATCCAAAAGGAATCAACTCTTCACTTAGTCCT 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499938125174400