Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq22541 86.0 4e-12 seq17428 86.0 4e-12 seq18875 84.2 1e-11 >seq22541 Length=1059 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||||| || |||||| || || || || || | ||| ||| | ||| || Sbjct 463 ACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTATCCTCA 522 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || |||||||| || || |||| || ||| || ||| | || | || || ||||| Sbjct 523 AGTTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 582 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | | || | ||| | |||||||||| || ||||||||| Sbjct 583 ATCTTGGCTTTGACATTTTCGATAGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTT 642 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||| || || ||||| |||||| Sbjct 643 CCGGTCAAAGTTTTGACGAAGATTTGCATA 672 >seq17428 Length=1321 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 34751 ATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC 34810 |||||| || || | || | |||||||||| || |||||| || ||||| ||||| Sbjct 252 ATTTCCACCTCTAAGTCTTAGGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTC 311 Query 34811 CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 | || ||| | || || | |||||||| || || |||| || ||| || ||| | Sbjct 312 AGCGAGAGTTCTGTTGTCTTCTAATTGTTTTCCTGCGAAGATTAATCTTTGTTGATCTGG 371 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTC 34930 || | || || ||||| ||||| ||||||| | | || | ||| | || Sbjct 372 AGGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTC 431 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | || ||||||||||| || | ||| || || ||||| |||||| Sbjct 432 AACGTCAAGAGTGATGGTTTTTCCAGTCAAAGTTTTGACGAAGATTTGCATA 483 >seq18875 Length=1247 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 ||||| || || | || | || ||||||| || |||||| || ||||| ||||| Sbjct 1082 TTTCCACCTCTAAGTCTGAGGACTAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCA 1023 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 | || ||| | || || | |||||||| || || |||| || ||| || ||| | Sbjct 1022 GCGAGAGTTCTGTTGTCCTCTAATTGTTTTCCTGCGAAAATTAATCTTTGTTGATCTGGA 963 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | || || ||||| ||||| ||||||| | | || | ||| | ||| Sbjct 962 GGAATACCTTCTTTGTCTTGGATCTTGGCTTTGACGTTTTCAATGGTGTCAGAAGGTTCA 903 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| | || ||||||||||| || | ||| || || ||||| |||||| Sbjct 902 ACATCAAGAGTGATGGTTTTTCCAGTCAAAGTTTTGACGAAGATTTGCATA 852 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||||| || |||||| || || || || || | ||| ||| | || || Sbjct 605 ACTAAGTGAAGAGTTGATTCTTTTTGGATATTGTAATCGGCAAGAGTTCTATTGTCCTCA 546 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||||||||| || |||| || ||| || ||| | || | || || ||||| Sbjct 545 AGTTGTTTTCCGGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGT 486 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || |||||| | | || | ||| | |||||||||| || ||||||||| Sbjct 485 ATTTTGGCTTTGACATTTTCGATGGTGTCAGAAGGTTCAACATCGAGAGTGATGGTTTTT 426 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||| || || ||||| |||||| Sbjct 425 CCAGTCAAAGTTTTGACGAAGATTTGCATA 396 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||||| || |||||| || ||||| || || | || ||| | || || Sbjct 833 ACTAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGCGAGTGTTCTATTGTCCTCT 774 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||||| ||||| |||| || ||| || ||| | || | || || ||||| Sbjct 773 AATTGTTTTCCTGCAAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 714 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | | || | ||| | |||||||| | || ||||||||| Sbjct 713 ATCTTGGCTTTGACGTTTTCAATAGTATCAGAAGGTTCAACATCAAGAGTGATGGTTTTT 654 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||| || || ||||| |||||| Sbjct 653 CCAGTCAAAGTTTTGACGAAGATTTGCATA 624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324485093823480