Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq30469 105 9e-18 >seq30469 Length=3929 Score = 105 bits (116), Expect = 9e-18 Identities = 204/298 (68%), Gaps = 15/298 (5%) Strand=Plus/Plus Query 125978 AATTATACCATTTTCTGATAGAACACAGTCAGCTAGAAATTGTTTTTATACTTCAATGGT 126037 ||| ||||| ||| ||||| | || || || | ||| || | | | | |||||| Sbjct 2364 AATAATACCTTTTCCTGATCATAATCAATCTCCTCGTAATGTTTATCAAAGTGCAATGGG 2423 Query 126038 TAAACAAGCTATAGGT-TTTGTTCCATGCCACAACTTAAA------AACTGAAACTGTAT 126090 ||||||||||||||| ||| ||| | | || || || || || ||| ||| Sbjct 2424 AAAACAAGCTATAGGTATTTATTCAACG----AATTTTAATATGAGAATGGATACTTTAT 2479 Query 126091 CACACACCTTAAATTATCCTCAAAAACCACTTGTTACAACCGATATTGCAGAATT--TAA 126148 | | ||| ||| || || ||||| | || ||||| | | | ||||| ||| Sbjct 2480 CTTATTTATTATTTTACCCACAGAAACCTTTAGTAACAACACAAAGTATGGAATTCTTAA 2539 Query 126149 TGGTCTAAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGG 126208 || || || | || |||||||||||||||||| || || |||||||||||| Sbjct 2540 AATTCAAA--GATTTACCTGCTGGTATTAATGCAATTGTGGCTATAATGTGTTACACTGG 2597 Query 126209 ATACAATCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTT 126266 ||||| |||||||||||||||||| | ||| || ||||| || ||||| |||||| Sbjct 2598 TTACAACCAAGAAGATAGTGTTATTATGAATCAAAGTTCTATTGATAGAGGCTTATTT 2655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658094285448600