Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq30469 120 4e-22 seq19433 111 2e-19 seq2308 91.5 2e-13 >seq30469 Length=3929 Score = 120 bits (132), Expect = 4e-22 Identities = 203/289 (70%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 192831 ATACCATTTTCCGATAGAACACAATCTGCTCGAAACTGTTTTT-ATACTTCTATGGTTAA 192889 ||||| ||| | ||| | |||||| |||| || ||||| | | | | | |||| || Sbjct 2368 ATACCTTTTCCTGATCATAATCAATCTCCTCGTAA-TGTTTATCAAAGTGCAATGGGAAA 2426 Query 192890 ACAAGCCATTGG-ATTTATTC--CGTGTCACAACTTAAAAACGGAAACAGTATCTCATAC 192946 |||||| || || |||||||| || | || | | || ||| || ||||| || Sbjct 2427 ACAAGCTATAGGTATTTATTCAACGAATTTTAATATGAGAATGGATACTTTATCTTATTT 2486 Query 192947 ATTAAATTATCCACAAAAACCCCTTGTTACCACAGATATTGCAAAATTTAATAAATTAGA 193006 |||| ||| ||||| ||||| | || || ||| | | | |||| ||||| | Sbjct 2487 ATTATTTTACCCACAGAAACCTTTAGTAACAACACAAAGTATGGAATTCTTAAAATTCAA 2546 Query 193007 CGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCA 193066 |||| || |||||||||||| ||||| |||||| || || |||||||| || || Sbjct 2547 AGATTTACCTGCTGGTATTAATGCAATTGTGGCTATAATGTGTTACACTGGTTACAACCA 2606 Query 193067 AGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTT 193115 |||||| ||| ||||| | ||| || ||||||||| ||||| |||||| Sbjct 2607 AGAAGATAGTGTTATTATGAATCAAAGTTCTATTGATAGAGGCTTATTT 2655 >seq19433 Length=9611 Score = 111 bits (122), Expect = 2e-19 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 192926 AACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACAGATAT 192985 || ||| || |||||||| |||| |||||| ||||| || | ||||||||| | | Sbjct 9609 AATGGACACTTTATCTCATTTATTATTTTATCCGCAAAAGCCTTTAGTTACCACACAAAG 9550 Query 192986 T--GCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATA 193043 | | || ||||| || ||| | |||| ||| |||||| ||||||||||| || ||| Sbjct 9549 TATGGAATTTTTAA-AATTTAAAGAATTA-CCAGCTGGTATAAATGCTATTGTAGCAATA 9492 Query 193044 GCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAA 193103 || ||||| || ||||| |||||||| ||||||||| | ||| || ||| ||||| Sbjct 9491 ATGTGTTATACAGGATATAACCAAGAAGATAGTATTATTATGAATCAAAGTTCCATTGAT 9432 Query 193104 AGAGGATTATTT 193115 |||| ||||| Sbjct 9431 CGAGGTCTATTT 9420 Score = 102 bits (112), Expect = 1e-16 Identities = 118/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 193443 ATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTAT 193501 || ||| ||||||| ||||||||| |||| || |||||| |||||||||| ||||| Sbjct 9068 ATTCCTCAAATAGGTGATAAATTTGCTTCAAGACATGGCC-AAAAAGGAACAATAGGTAT 9010 Query 193502 GATTTATTCACAAGAAGATATGCCATTTACAGCTTCA-GGTATGGTACCAGATATTATTA 193560 || |||| ||| ||||||||||| |||| | | | || || ||| |||||||||| Sbjct 9009 GACTTATCGACAGGAAGATATGCCTTTTA-ATATCGAGGGAATAACACCTGATATTATTA 8951 Query 193561 TTAATCCAAATTGTATTCCATCCAGAATGACCAT 193594 | ||||| || ||||||| | |||||||||| Sbjct 8950 TAAATCCTCATGCTATTCCAAGCCGAATGACCAT 8917 >seq2308 Length=5858 Score = 91.5 bits (100), Expect = 2e-13 Identities = 170/241 (71%), Gaps = 13/241 (5%) Strand=Plus/Plus Query 192882 ATGGTTAAACAAGCCATTGGATTTATTCCGTGTCACA-----ACTTAAAAACGGAAACAG 192936 |||| ||||||||||| ||| || | | || ||| | | |||| || ||| || Sbjct 4313 ATGGGAAAACAAGCCATAGGAGTT-TACTGT-TCAAACTTTAATTTAAGAATGGATACCT 4370 Query 192937 TATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACAGA-TAT-TGCAAAATT 192994 || |||| ||| |||||| |||| ||| |||||| ||| | | | || | || Sbjct 4371 TAGCTCACCTTTTATTTTATCCTCAAAGACCGCTTGTTGTCACTCAATCTATGGAGTATC 4430 Query 192995 TAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATAC 193054 | | |||| | || | || || || |||||||||||||| ||| |||||||| Sbjct 4431 TCA--AATTCAAGGACTTACCTGCAGGAATCAATGCTATTGTTGCCATAATGTGCTATAC 4488 Query 193055 TGGTTATAATCAAGAAGACAGTATTATTTTAAAT-AAAGCTTCTATTGAAAGAGGATTAT 193113 || |||||||||||||| ||| | || | ||| ||||| |||||||| |||||||||| Sbjct 4489 GGGATATAATCAAGAAGATAGTTTAATAATGAATCAAAGC-TCTATTGATAGAGGATTAT 4547 Query 193114 T 193114 | Sbjct 4548 T 4548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634879582609800