Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq3952 114 2e-20 seq30469 109 7e-19 seq19433 86.0 8e-12 >seq3952 Length=5625 Score = 114 bits (126), Expect = 2e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 172886 ATTAAGGTTGCTCAGTTGAGT-GGTTACATTGCAGAACAAACTGATTATAAACATGGTGA 172944 || || || || || || ||| ||||| ||| ||||| |||| |||||||||||| || Sbjct 2301 ATAAAAGTAGCGCAATT-AGTCGGTTATATTAGTGAACATACTGCTTATAAACATGGAGA 2359 Query 172945 ACAAAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACAT 173004 |||| |||| || ||||||| | | | || ||| |||| |||||| ||||||| || Sbjct 2360 ACAATCCCTTGCTGGAACTATAGTCGCAATGGCTCAGAATTTCGTAGGTTCAAATAATAT 2419 Query 173005 AACATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGC 173064 | |||||| ||| ||||||| || ||||| ||| | ||||||| ||||| | || Sbjct 2420 CAATTTACTTATGCCAAATGGTCAATTCGGTACAAGAAATAAAGGAGGCAAAGACTGTGC 2479 Query 173065 CGCATCAAGGTATATTTATACTAAA 173089 || || ||||||| |||| || Sbjct 2480 AAGTTCGAGATATATTTTTACTGAA 2504 >seq30469 Length=3929 Score = 109 bits (120), Expect = 7e-19 Identities = 202/292 (69%), Gaps = 7/292 (2%) Strand=Plus/Plus Query 200955 ATTATACCATTTTCTGATAGAACACAATCAGCGCGAAATTGTTTTTATACTTCTATGGTT 201014 || ||||| ||| ||||| | ||||| | || ||| || | | | | | |||| Sbjct 2365 ATAATACCTTTTCCTGATCATAATCAATCTCCTCGTAATGTTTATCAAAGTGCAATGGGA 2424 Query 201015 AAACAAGCTATAGGT-TTTGTTCCATG--TCACAACTTAAAAACTGAAACTGTATCACAT 201071 ||||||||||||||| ||| ||| | | | || | | || || ||| |||| || Sbjct 2425 AAACAAGCTATAGGTATTTATTCAACGAATTTTAATATGAGAATGGATACTTTATCTTAT 2484 Query 201072 ACCTTAAATTATCCTCAAAAACCACTTGTTACAACTGACATTGCAGAATT--TAATGGTC 201129 ||| ||| || || ||||| | || ||||| | | | ||||| ||| || Sbjct 2485 TTATTATTTTACCCACAGAAACCTTTAGTAACAACACAAAGTATGGAATTCTTAAAATTC 2544 Query 201130 TAAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACA 201189 || || | || |||||||||||||||||| || || ||||||||||| |||| Sbjct 2545 AAA--GATTTACCTGCTGGTATTAATGCAATTGTGGCTATAATGTGTTACACTGGTTACA 2602 Query 201190 ATCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 | |||||||||||||||||| | ||| || |||||||| ||||| ||||| Sbjct 2603 ACCAAGAAGATAGTGTTATTATGAATCAAAGTTCTATTGATAGAGGCTTATT 2654 >seq19433 Length=9611 Score = 86.0 bits (94), Expect = 8e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 201057 GAAACTGTATCACATACCTTAAATTATCCTCAAAAACCACTTGTTACAACTGACATTGCA 201116 || ||| |||| ||| ||| |||||| ||||| || | ||||| || | | | Sbjct 9605 GACACTTTATCTCATTTATTATTTTATCCGCAAAAGCCTTTAGTTACCACACAAAGTATG 9546 Query 201117 GAATTTA-ATGGTCTAAATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATG 201175 |||||| | | |||| |||| || |||||| ||||| ||||||||||| || Sbjct 9545 GAATTTTTAAAATTTAAA-GAATTACCAGCTGGTATAAATGCTATTGTAGCAATAATGTG 9487 Query 201176 TTACACTGGATACAATCAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGG 201235 ||| || ||||| || |||||||||||| ||||| | ||| || || ||||| |||| Sbjct 9486 TTATACAGGATATAACCAAGAAGATAGTATTATTATGAATCAAAGTTCCATTGATCGAGG 9427 Query 201236 TTTATT 201241 | |||| Sbjct 9426 TCTATT 9421 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 201564 ATACGTATACCAGAAATTGGAGATAAATTTTGTTCTGGA-ATGGCCCAAAAAGGAACTTG 201622 ||| | || || |||| || ||||||||| ||| || |||||| |||||||||| Sbjct 9074 ATAAGAATTCCTCAAATAGGTGATAAATTTGCTTCAAGACATGGCC-AAAAAGGAACAAT 9016 Query 201623 TGGTATGATTTATGCACAAGAAGATATGCCGTTTACACAATC--GGGTATGACCCCGGAT 201680 ||||||| |||| ||| ||||||||||| ||| | ||| ||| || || || ||| Sbjct 9015 AGGTATGACTTATCGACAGGAAGATATGCCTTTT--AATATCGAGGGAATAACACCTGAT 8958 Query 201681 ATTATAATCAATCCAAATTGTATACCATCAAGAATGACCAT 201721 ||||| || ||||| || ||| ||| |||||||||| Sbjct 8957 ATTATTATAAATCCTCATGCTATTCCAAGCCGAATGACCAT 8917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654972550815000