Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq19433 111 2e-19 seq30469 104 3e-17 seq3952 95.1 2e-14 seq5586 91.5 2e-13 seq2308 86.0 8e-12 >seq19433 Length=9611 Score = 111 bits (122), Expect = 2e-19 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 192479 AACGGAAACAGTCTCTCATACATTAAATTATCCACAAAAACCACTTGTTACCACAGATAT 192538 || ||| || | |||||| |||| |||||| ||||| || | ||||||||| | | Sbjct 9609 AATGGACACTTTATCTCATTTATTATTTTATCCGCAAAAGCCTTTAGTTACCACACAAAG 9550 Query 192539 T--GCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATA 192596 | | || ||||| || ||| | |||| ||| |||||| ||||||||||| || ||| Sbjct 9549 TATGGAATTTTTAA-AATTTAAAGAATTA-CCAGCTGGTATAAATGCTATTGTAGCAATA 9492 Query 192597 GCTTGCTATACTGGCTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAA 192656 || ||||| || |||||||||||||| ||||||||| | ||| || ||| ||||| Sbjct 9491 ATGTGTTATACAGGATATAACCAAGAAGATAGTATTATTATGAATCAAAGTTCCATTGAT 9432 Query 192657 AGAGGATTATTT 192668 |||| ||||| Sbjct 9431 CGAGGTCTATTT 9420 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 192996 ATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTAT 193054 || ||| ||||||| ||||||||| ||| || |||||| |||||||||| ||||| Sbjct 9068 ATTCCTCAAATAGGTGATAAATTTGCTTCAAGACATGGCC-AAAAAGGAACAATAGGTAT 9010 Query 193055 GATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTAT 193114 || |||| ||| ||||||||||| |||| | || || ||| ||||||||||| Sbjct 9009 GACTTATCGACAGGAAGATATGCCTTTTAATATCGAGGGAATAACACCTGATATTATTAT 8950 Query 193115 TAATCCAAATTGTATTCCGTCCAGAATGACCAT 193147 ||||| || |||||| | |||||||||| Sbjct 8949 AAATCCTCATGCTATTCCAAGCCGAATGACCAT 8917 >seq30469 Length=3929 Score = 104 bits (114), Expect = 3e-17 Identities = 201/293 (69%), Gaps = 13/293 (4%) Strand=Plus/Plus Query 192384 ATACCATTTTCCGATAGAACACAATCTGCTCGAAACTGTTTTT-ATACTTCTATGGTTAA 192442 ||||| ||| | ||| | |||||| |||| || ||||| | | | | | |||| || Sbjct 2368 ATACCTTTTCCTGATCATAATCAATCTCCTCGTAA-TGTTTATCAAAGTGCAATGGGAAA 2426 Query 192443 ACAAGCCATTGGG-TTTATTCCTTGCCACAACTTAAA------AACGGAAACAGTCTCTC 192495 |||||| || || ||||||| | || || || || ||| || | ||| Sbjct 2427 ACAAGCTATAGGTATTTATTCAACG----AATTTTAATATGAGAATGGATACTTTATCTT 2482 Query 192496 ATACATTAAATTATCCACAAAAACCACTTGTTACCACAGATATTGCAAAATTTAATAAAT 192555 || |||| ||| ||||| ||||| | || || ||| | | | |||| |||| Sbjct 2483 ATTTATTATTTTACCCACAGAAACCTTTAGTAACAACACAAAGTATGGAATTCTTAAAAT 2542 Query 192556 TAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATA 192615 | | |||| || |||||||||||| ||||| |||||| || || ||||| || | Sbjct 2543 TCAAAGATTTACCTGCTGGTATTAATGCAATTGTGGCTATAATGTGTTACACTGGTTACA 2602 Query 192616 ACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTT 192668 |||||||||| ||| ||||| | ||| || ||||||||| ||||| |||||| Sbjct 2603 ACCAAGAAGATAGTGTTATTATGAATCAAAGTTCTATTGATAGAGGCTTATTT 2655 >seq3952 Length=5625 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 || ||||| || |||||| || ||| || ||||| || | |||||||||||| ||| Sbjct 2301 ATAAAAGTAGCGCAATTAGTCGGTTATATTAGTGAACATACTGCTTATAAACATGGAGAA 2360 Query 165220 CAAAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATA 165279 ||| | || ||||||| | | || || |||| || ||| |||||||||| Sbjct 2361 CAATCCCTTGCTGGAACTATAGTCGCAATGGCTCAGAATTTCGTAGGTTCAAATAATATC 2420 Query 165280 GCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCG 165339 |||||| || |||||||||| ||||| ||| ||||||| ||||| | ||| Sbjct 2421 AATTTACTTATGCCAAATGGTCAATTCGGTACAAGAAATAAAGGAGGCAAAGACTGTGCA 2480 Query 165340 GCATCAAGATATATTTATACCAAACCACATAAAATATTAAAATATATATTTA 165391 || |||||||||| ||| || | |||| || || | || |||||| Sbjct 2481 AGTTCGAGATATATTTTTACTGAATTAAATAAGGTAACAAGACATTTATTTA 2532 >seq5586 Length=5471 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 50319 AGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAG 50378 |||||| ||| |||| |||| ||| | ||||| ||||||||||| || ||| | Sbjct 3889 AGATGGAGATTTTGTAATATTTAATCGTCAACCTTCACTTCATAAAATGTCAATGATGGG 3830 Query 50379 TTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAGCTATGACTAAAGC 50438 | |||| ||||| || || |||| | | |||||| | | || | | Sbjct 3829 ACATCGTGTTAGAATTCTTCCTCATTCTACTTTTAGATTAAATTTATCAGTTACAACTCC 3770 Query 50439 ATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCAT 50491 |||||||||||||||||| || |||||||||||||||||| |||| ||||||| Sbjct 3769 ATATAATGCTGATTTTGACGGAGATGAAATGAATTTACATTTTCCCCAATCAT 3717 >seq2308 Length=5858 Score = 86.0 bits (94), Expect = 8e-12 Identities = 78/96 (81%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 192573 GGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACCAAGAAGACAGTATT 192632 || || |||||||||||||| ||| |||||||| || ||||| |||||||| ||| | Sbjct 4454 GGAATCAATGCTATTGTTGCCATAATGTGCTATACGGGATATAATCAAGAAGATAGTTTA 4513 Query 192633 ATTTTAAAT-AAAGCTTCTATTGAAAGAGGATTATT 192667 || | ||| ||||| |||||||| ||||||||||| Sbjct 4514 ATAATGAATCAAAGC-TCTATTGATAGAGGATTATT 4548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628236301017600