Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq31761 93.3 4e-14 seq30469 87.8 2e-12 >seq31761 Length=3605 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 21256 TTATCCACAGAAGCCTTTGGTTACAACAGATATTGCCGAATACAACCAAATCAACGACTT 21315 ||| |||||||||||||| || |||||| | | | |||| | || |||| ||||| Sbjct 1416 TTACCCACAGAAGCCTTTAGTAACAACACAGAGTATGGAATTCTTAAAATTCAAAGACTT 1357 Query 21316 TCCGAACGGGATAAACGCGATTGTGGCGATAGCGTGTTATACGGGGTATAACCAAGAAGA 21375 || || |||||||| || ||||| || |||||| || || || ||||||||||| Sbjct 1356 ACCTGCGGGTATAAACGCAATCGTGGCTATTATGTGTTACACTGGTTACAACCAAGAAGA 1297 Query 21376 CAGCGTTATTTTGAACAAGGCCTCAATTGAAAGAGGCCTGTTTGGA 21421 ||| ||||| ||||| | || ||||| |||| ||||| || Sbjct 1296 CAGTGTTATCATGAACCAAAGTTCGATTGATCGAGGTTTGTTTAGA 1251 >seq30469 Length=3929 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/241 (69%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 21185 ATGGTTAAACAAGCTATTGGT-TTTATAC--CGTGTCATGCTCTTAAAACAGAAACTGTT 21241 |||| ||||||||||| ||| ||||| | || | | | | | || || ||| | Sbjct 2419 ATGGGAAAACAAGCTATAGGTATTTATTCAACGAATTTTAATATGAGAATGGATACTTTA 2478 Query 21242 TCGCATACCTTAAATTATCCACAGAAGCCTTTGGTTACAACAGATATTGCCGAATACAAC 21301 || || ||| ||| |||||||| ||||| || |||||| | | | |||| | Sbjct 2479 TCTTATTTATTATTTTACCCACAGAAACCTTTAGTAACAACACAAAGTATGGAATTCTTA 2538 Query 21302 CAAATCAACGACTTTCCGAACGGGATAAACGCGATTGTGGCGATAGCGTGTTATACGGGG 21361 || |||| || || || || || || || |||||||| ||| |||||| || || Sbjct 2539 AAATTCAAAGATTTACCTGCTGGTATTAATGCAATTGTGGCTATAATGTGTTACACTGGT 2598 Query 21362 TATAACCAAGAAGACAGCGTTATTTTGAA-CAAGGCCTCAATTGAAAGAGGCCTGTTTGG 21420 || ||||||||||| || |||||| |||| ||| | || ||||| |||||| | ||| | Sbjct 2599 TACAACCAAGAAGATAGTGTTATTATGAATCAAAG-TTCTATTGATAGAGGCTTATTTAG 2657 Query 21421 A 21421 | Sbjct 2658 A 2658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521300897323800