Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Entodinium_20caudatum_20[genbank_20GCA_5F002087855.1_202017-04-12] 37,535 sequences; 81,718,944 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq17428 91.5 3e-13 seq28577 86.0 1e-11 seq28501 86.0 1e-11 seq28493 86.0 1e-11 seq21422 84.2 4e-11 >seq17428 Length=1321 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| ||||||| || || || ||||||| |||||||| ||| ||||| Sbjct 967 AGAGTTGATTCCTTTTGGATGTTGTAATCAGCAAGAGTTCTGTTGTCCTCTAATTGTTTT 1026 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | ||||||| |||||||||| ||||| | || |||| || ||||| ||||||||| Sbjct 1027 CCTGCGAAGATTAATCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTTGCT 1086 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 1087 TTGACATTTTCAATGGT 1103 >seq28577 Length=722 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/129 (76%), Gaps = 11/129 (9%) Strand=Plus/Plus Query 81652 TTCCTTCTGTATATTATAATCAGATAGAGTTCTA----CAGTC--TTCTA-AC----AAA 81700 |||||| || ||||||||||| | || |||||| || || || || || ||| Sbjct 425 TTCCTTTTGAATATTATAATCGGCTAATGTTCTATTATCATTCAATTGTATACCATGAAA 484 Query 81701 GATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATT 81760 || |||||||||||| ||||| | ||| |||||||||||||||| |||||||| | ||| Sbjct 485 AATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTTGCTTTCACATT 544 Query 81761 TTCAATCGT 81769 || || || Sbjct 545 CTCTATTGT 553 >seq28501 Length=727 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| || ||||||||||||| || |||| || ||||||| | Sbjct 432 AGAGTAGATTCTTTTTGTATATTATAATATACTAAAGTTTTATAGTCTTCAACTTGTTTT 491 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || | |||||||||| ||||| | || |||| ||||||||||| |||||| Sbjct 492 CCAGCAAAAATCATTCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTTGCT 551 Query 81753 TTTATATTTTCAATCGTAT 81771 || || | ||| || |||| Sbjct 552 TTAATTTCTTCTATTGTAT 570 >seq28493 Length=728 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| || || || || |||||||||||| || ||| || ||||| || Sbjct 359 AGAGTTAAATCTTTTTGGATATTATAATCAACTAAAGTCCTTTTATCTTCCAATTGTATA 300 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || |||||||||||| |||| | ||| ||||||||||||||||||| ||| Sbjct 299 CCAGCAAAAATAAGTCTTTGTTGATCTGGGGGAATTCCTTCCTTATCTTGAATCTTAGCT 240 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||| || || |||| Sbjct 239 TTCACATTCTCTATTGTAT 221 >seq21422 Length=9460 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/133 (74%), Gaps = 11/133 (8%) Strand=Plus/Minus Query 81650 AATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTC--------TAACA--A 81699 ||||| || || ||||||||||||| || ||||||| ||||| || || | Sbjct 509 AATTCTTTTTGGATATTATAATCAGCTAAAGTTCTATTATCTTCCATTTCTTTACCAGCA 450 Query 81700 AGATTA-GTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATA 81758 ||| || ||||||||||| | | | ||| |||| ||||||||||| |||| ||| ||| Sbjct 449 AGAATAAGTCTTTGTTGATCAATAGGAATTCCTTCTTTATCTTGAATTTTTGATTTCATA 390 Query 81759 TTTTCAATCGTAT 81771 ||||| || |||| Sbjct 389 TTTTCTATTGTAT 377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902987330757600